mkdocs.yml

site_name: High-definition modeling of chromatin + transcriptomics data
docs_dir: docs/source
theme:
  name: material
  palette:
    primary: white
  logo: static/logo.png
  favicon: static/favicon.png
  custom_dir: docs/override
  features:
    - navigation.tracking
    - navigation.tabs
    - navigation.footer
    - navigation.sections
    - toc.follow
    - toc.integrate

site_url: "https://chromatinhd.org/"
repo_url: https://github.com/DeplanckeLab/ChromatinHD

plugins:
  - mkdocstrings:
      handlers:
        python:
          import:
          - https://docs.python-requests.org/en/master/objects.inv
          - https://installer.readthedocs.io/en/latest/objects.inv
          options:
            docstring_style: google
            heading_level: 2
            inheritance_diagram: True
            show_root_heading: True
            show_symbol_type_heading: True
            docstring_section_style: table
  - mike
  - search
  - mkdocs-jupyter:
      include: ["*.ipynb"] # Default: ["*.py", "*.ipynb"]
      remove_tag_config:
        remove_input_tags:
          - hide_code
        remove_all_outputs_tags:
          - hide_output
  - social
  - awesome-pages
extra:
  version:
    provider: mike
  analytics:
    provider: google
    property: G-2EDCBPY71H
  social:
    - icon: fontawesome/brands/github 
      link: https://github.com/DeplanckeLab/ChromatinHD
markdown_extensions:
  - admonition
  - pymdownx.details
  - pymdownx.superfences
  - attr_list
  - md_in_html
  - pymdownx.details
extra_css:
  - stylesheets/extra.css
  - stylesheets/extra-reference.css
extra_javascript:
  - javascripts/reference.js
copyright: Copyright © 2022 - 2023 Wouter Saelens