Rename Edge to Link (#2023)

*everywhere*

This is automatic rename, and then slowly staging the changes. Main
exceptions found so far:
- UGrid uses edge_dimension and similar names
- Networkx has a Graph edges attribute and methods
- Graphs.jl has an edges method and keywords

@visr The only breaking change are that output arrow tables now have
`link_id` instead of `edge_id`. I don't think there's a way around that.

core/ext/RibasimMakieExt.jl

@@ -23,23 +23,23 @@ function Ribasim.plot_basin_data(model::Model)
     f
 end
 
-function Ribasim.plot_flow!(model::Model, ax::Axis, edge_metadata::Ribasim.EdgeMetadata)
+function Ribasim.plot_flow!(model::Model, ax::Axis, link_metadata::Ribasim.LinkMetadata)
     flow_data = DataFrame(Ribasim.flow_table(model))
-    flow_data = filter(:edge_id => ==(edge_metadata.id), flow_data)
-    label = "$(edge_metadata.edge[1]) → $(edge_metadata.edge[2])"
+    flow_data = filter(:link_id => ==(link_metadata.id), flow_data)
+    label = "$(link_metadata.link[1]) → $(link_metadata.link[2])"
     scatterlines!(ax, flow_data.time, flow_data.flow_rate; label)
     return nothing
 end
 
 function Ribasim.plot_flow(model::Model; skip_conservative_out = true)
     f = Figure()
     ax = Axis(f[1, 1]; xlabel = "time", ylabel = "flow rate [m³s⁻¹]")
-    for edge_metadata in values(model.integrator.p.graph.edge_data)
+    for link_metadata in values(model.integrator.p.graph.edge_data)
         if skip_conservative_out &&
-           edge_metadata.edge[1].type in Ribasim.conservative_nodetypes
+           link_metadata.link[1].type in Ribasim.conservative_nodetypes
             continue
         end
-        Ribasim.plot_flow!(model, ax, edge_metadata)
+        Ribasim.plot_flow!(model, ax, link_metadata)
     end
     axislegend(ax)
     f

core/regression_test/regression_test.jl

@@ -96,7 +96,7 @@ end
 
                 # Testbench for flow.arrow
                 @test flow.time == flow_bench.time
-                @test flow.edge_id == flow_bench.edge_id
+                @test flow.link_id == flow_bench.edge_id
                 @test flow.from_node_id == flow_bench.from_node_id
                 @test flow.to_node_id == flow_bench.to_node_id
                 @test all(q -> abs(q) < 0.01, flow.flow_rate - flow_bench.flow_rate)
@@ -167,7 +167,7 @@ end
 
                 # Testbench for flow.arrow
                 @test flow.time == flow_bench.time
-                @test flow.edge_id == flow_bench.edge_id
+                @test flow.link_id == flow_bench.edge_id
                 @test flow.from_node_id == flow_bench.from_node_id
                 @test flow.to_node_id == flow_bench.to_node_id
                 @test all(q -> abs(q) < 0.01, flow.flow_rate - flow_bench.flow_rate)
@@ -234,7 +234,7 @@ end
 
                 # Testbench for flow.arrow
                 @test flow.time == flow_bench.time
-                @test flow.edge_id == flow_bench.edge_id
+                @test flow.link_id == flow_bench.edge_id
                 @test flow.from_node_id == flow_bench.from_node_id
                 @test flow.to_node_id == flow_bench.to_node_id
 

core/src/Ribasim.jl

@@ -115,7 +115,7 @@ using DiffEqCallbacks:
     SavedValues,
     SavingCallback
 
-# The network defined by the Node and Edge table is converted to a graph internally.
+# The network defined by the Node and Link table is converted to a graph internally.
 using Graphs:
     DiGraph, Edge, edges, inneighbors, nv, outneighbors, induced_subgraph, is_connected
 # Convenience functionality built on top of Graphs. Used to store e.g. node and edge metadata