Update all repos 2025-02-15

usegalaxy.org/annotation.yml.lock

@@ -521,6 +521,7 @@ tools:
 - name: compleasm
   owner: iuc
   revisions:
+  - 7109a27a11db
   - 8f20a5b9b282
   - cfec9601b25d
   tool_panel_section_id: annotation

usegalaxy.org/assembly.yml.lock

@@ -80,6 +80,7 @@ tools:
   - 14ddfc8ffb93
   - 7518ee87b53d
   - a96f3ad4e0d8
+  - ab208c87d973
   - de387b2b2803
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
@@ -359,6 +360,7 @@ tools:
   - 690c2caa367e
   - 6ec1b853c8fd
   - 764f2516d837
+  - 7729cd89aaf7
   - 8ccbf07a5433
   - ad1149b4f795
   - f4a3eff8ab85
@@ -511,17 +513,20 @@ tools:
   owner: iuc
   revisions:
   - 34245579d255
+  - fa011b0032b0
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: fastk_histex
   owner: iuc
   revisions:
+  - 1fcb1a2950cb
   - b897c5daf0ce
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: fastk_logex
   owner: iuc
   revisions:
   - 73ddd200456a
+  - fb6b6d5e6bd5
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly

usegalaxy.org/bbtools.yml.lock

@@ -9,6 +9,7 @@ tools:
   - 0840ba83860c
   - 159b04e36791
   - 1c427e24fb79
+  - 55e500606bbe
   - 7beb76ffbc0f
   - bf0cb5dd02f2
   - d1f62024a08b
@@ -18,6 +19,7 @@ tools:
 - name: bbtools_bbmap
   owner: iuc
   revisions:
+  - 20ab37575227
   - 3171f7f52576
   - 3f94a2e3d513
   - 456d8ebb6a28
@@ -30,6 +32,7 @@ tools:
 - name: bbtools_bbmerge
   owner: iuc
   revisions:
+  - 08b2f8e6846d
   - 1af48f9cc27b
   - 1bb2b5b52030
   - 5d8b93c0731f
@@ -46,6 +49,7 @@ tools:
   - 1baa4ad1ac2f
   - 1ef267476a17
   - 3fc12917bbdb
+  - 5f047a0d4c2e
   - 770bceda7785
   - a9329b77db78
   - e607b61a68ad
@@ -58,6 +62,7 @@ tools:
   - 66b138a2e74c
   - 7e041c120b96
   - adec76ebc868
+  - b4279a293312
   - df9743790176
   - ee407fae3ccd
   - f36a69c3729a
@@ -69,6 +74,7 @@ tools:
   - 0ddf147d1897
   - 20aef74d20a1
   - 654c9da47f74
+  - 7ad0f4bfa923
   - cbc75076778f
   - ce13b4678f18
   - e4fb34b79770

usegalaxy.org/data_managers.yml.lock

@@ -109,6 +109,7 @@ tools:
   revisions:
   - 13851aefa67a
   - 1e34d2e3d285
+  - 201eff2131d6
   - 539b008cfe1c
   - 8c533e19b697
   - 90b4d4f0a3a4

usegalaxy.org/fasta_fastq.yml.lock

@@ -26,6 +26,7 @@ tools:
   - aa784cb3810d
   - b1c926deaa2d
   - c053d4cad713
+  - c0b2c2e39c9c
   - c5e2e5902201
   - de6cebe3c043
   - e4691e1589d3
@@ -43,6 +44,7 @@ tools:
 - name: fastp
   owner: iuc
   revisions:
+  - 10678d49d39e
   - 1d8fe9bc4cb0
   - 65b93b623c77
   - a626e8c0e1ba
@@ -323,6 +325,7 @@ tools:
   owner: iuc
   revisions:
   - 6756c87dc2d4
+  - 9108bd9450cb
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: ucsc_fasplit
@@ -337,6 +340,7 @@ tools:
   owner: iuc
   revisions:
   - 276b4111b253
+  - 437d5c72f2e3
   - 71ad4a56c40c
   - 8250ea3a1501
   - 9570563fb686
@@ -375,6 +379,7 @@ tools:
   owner: iuc
   revisions:
   - 015cf18f4a15
+  - 14ba4366aca4
   - 6a675c3aa610
   - 7a7e33d28f62
   - 9fa7803d1c51
@@ -384,6 +389,7 @@ tools:
 - name: umi_tools_whitelist
   owner: iuc
   revisions:
+  - 382326c1b1e1
   - 4c8a1c7d3608
   - 953b4821b183
   - e4e12f0b3af1
@@ -393,6 +399,7 @@ tools:
   owner: iuc
   revisions:
   - 04e09969d376
+  - 9cd1c2f5d90e
   - c5a2ee07c4e1
   - f1d33e4c7bd8
   tool_panel_section_id: fasta_fastq
@@ -402,6 +409,7 @@ tools:
   revisions:
   - 257be15474a7
   - 428735be9764
+  - 7f3b9b5db85c
   - d6255614afd7
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ

usegalaxy.org/fastq_quality_control.yml.lock

@@ -34,6 +34,7 @@ tools:
   - abfd8a6544d7
   - b2f1f75d49c4
   - bf675f34b056
+  - d2aaac19f42f
   - f7985e0479b9
   - f7e2f1eb3a16
   tool_panel_section_id: fastq_quality_control

usegalaxy.org/graph_display_data.yml.lock

@@ -112,6 +112,7 @@ tools:
   revisions:
   - 6f134426c2b0
   - cdb9e89e2970
+  - d0b9dd19e919
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
 - name: mummer
@@ -313,6 +314,7 @@ tools:
   owner: iuc
   revisions:
   - 2f557f6abbfb
+  - 5e08a1e22dbc
   - 73b8cb5bddcd
   - 83c573f2e73c
   - 99ace6c1ff57

usegalaxy.org/mapping.yml.lock

@@ -101,6 +101,7 @@ tools:
   - 3f4d6399997b
   - 53c0b7a1a0c3
   - 5cc34c3f440d
+  - 66367287b4e6
   - 77b2770508f6
   - 8c6cd2650d1f
   - 92678fcb1a5f
@@ -146,6 +147,7 @@ tools:
 - name: bbtools_bbmap
   owner: iuc
   revisions:
+  - 20ab37575227
   - 3171f7f52576
   - 3f94a2e3d513
   - 456d8ebb6a28

usegalaxy.org/metagenomic_analysis.yml.lock

@@ -18,6 +18,7 @@ tools:
   revisions:
   - 1e3323a44643
   - 54f751e413f4
+  - 60f307965815
   - 62c9df8382c2
   - 64be1ac21109
   - e8ac2b53f262
@@ -196,6 +197,7 @@ tools:
   owner: iuc
   revisions:
   - 2a90d2fd3336
+  - 4e469b758915
   - 52a911972c02
   - 7b8cb2b02978
   - a58e4a43f49c
@@ -212,6 +214,7 @@ tools:
   - 32c9ea835770
   - 498d57610fcd
   - 555ccac8a4c5
+  - 6f06d501b7e6
   - 78faebd0879c
   - 806fe614ca46
   - 8daf4564ccda
@@ -227,6 +230,7 @@ tools:
   - 5b5a7af9fbb4
   - 63f86089423e
   - 65db807336bc
+  - 705d26fbea02
   - 76d3d2b10738
   - 79212a309499
   - 7c2100246a2f
@@ -244,11 +248,13 @@ tools:
   - 7f3b59dee073
   - 7f8f0e9fcb37
   - b6dddf8c2e6f
+  - efe26de231ec
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: dada2_filterandtrim
   owner: iuc
   revisions:
+  - 00e0347751b1
   - 23fc35093b11
   - 34e55239e68b
   - 777f9846c56d
@@ -269,6 +275,7 @@ tools:
   - 6b4ddc3b64bd
   - 84fd33a60b35
   - 96336c6a2bb7
+  - b35a5e8ff0fe
   - f79565b12646
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
@@ -281,6 +288,7 @@ tools:
   - 5fe3edf19b9c
   - 75403243703a
   - 8c202e741d68
+  - a14a18a47c36
   - afdfa35a89d9
   - c48d42d65d2b
   tool_panel_section_id: metagenomic_analysis
@@ -296,6 +304,7 @@ tools:
   - 9ccec6ed8e82
   - bfd62e881837
   - e96bbb9e24ea
+  - ebd632e95aae
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: dada2_mergepairs
@@ -306,6 +315,7 @@ tools:
   - 306a40d4bb8f
   - 35176674168c
   - 5c865a382933
+  - 646c58820267
   - 69900ffd3b8e
   - 84743da21318
   - b1e55c248f17
@@ -316,6 +326,7 @@ tools:
   revisions:
   - 0a1224c4b781
   - 19299bb1c6af
+  - 390bc2645138
   - 4cc834cce4fb
   - 7d28da5e9e27
   - 9058d8943303
@@ -418,6 +429,7 @@ tools:
   revisions:
   - 280386b252a5
   - 45210df786b9
+  - 9016f67b716f
   - cef64c36c89e
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
@@ -547,6 +559,7 @@ tools:
   owner: iuc
   revisions:
   - eb50e7eca3dc
+  - f375b4f6ef57
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: megahit_contig2fastg
@@ -558,6 +571,7 @@ tools:
 - name: metabat2_jgi_summarize_bam_contig_depths
   owner: iuc
   revisions:
+  - 00e3b4ef7e0c
   - ec045ca00b50
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
@@ -615,13 +629,15 @@ tools:
 - name: phyloseq_from_dada2
   owner: iuc
   revisions:
+  - 0b9d4ec77c4f
   - 87064cb77a52
   - d1c93a32cb25
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: phyloseq_from_biom
   owner: iuc
   revisions:
+  - 847f433f202b
   - b6a38f6222af
   - c0101c72b8af
   tool_panel_section_id: metagenomic_analysis
@@ -630,13 +646,15 @@ tools:
   owner: iuc
   revisions:
   - 5007bc8a3d90
+  - bbd9d1022144
   - dfe800a3faaf
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: phyloseq_plot_richness
   owner: iuc
   revisions:
   - '817853857084'
+  - d6cbeb48294d
   - fb7c4bbe8994
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis

usegalaxy.org/multiple_alignments.yml.lock

@@ -59,6 +59,7 @@ tools:
   owner: iuc
   revisions:
   - 502018997bae
+  - 5c7e6ef78006
   - abe34706eddf
   - b3acbb3a6af0
   - e8fdceffea4c
@@ -71,13 +72,15 @@ tools:
   - 48823c9635a4
   - 48badcd29c5d
   - 57f042937ba7
+  - b7bc272143fb
   - bcd65de9725b
   - fc143c06a842
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
 - name: mummer_dnadiff
   owner: iuc
   revisions:
+  - 29662f643859
   - 315c678562d2
   - 5561a1193611
   - 60698466facd
@@ -88,6 +91,7 @@ tools:
 - name: mummer_show_coords
   owner: iuc
   revisions:
+  - 4c89814871e8
   - 959c1f8dae95
   - b4124df98b26
   - b8e2c2f95d26
@@ -98,6 +102,7 @@ tools:
 - name: mummer_mummerplot
   owner: iuc
   revisions:
+  - 029a793f39b6
   - 4fc0cb2ac8ae
   - c0cedc12fcc5
   - e8c60daa41e0
@@ -108,6 +113,7 @@ tools:
 - name: mummer_nucmer
   owner: iuc
   revisions:
+  - 27fff8d3793e
   - 5b0b49b5421c
   - 636b049e6141
   - 7cd7a55a678d