Skip to content

Issues: DKFZ-ODCF/AlignmentAndQCWorkflows

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

47 Open 10 Closed
47 Open 10 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

small number of reads / no aberrant reads triggers exception in chrom_diff.r bug Something isn't working
#92 opened Dec 4, 2024 by GWarsow
1
Roddy cannot zip folder
#91 opened Jun 22, 2024 by AndreasKienzle
.DepthOfCoverage_Target.txt has odd output
#90 opened Jan 31, 2024 by vinjana
Get fingerprinting to work with ALT-contig reference
#86 opened Jun 22, 2022 by vinjana
Remove the biobambam sort option
#85 opened May 4, 2022 by vinjana
Add bwa-postalt.js to WGBS bwa job
#84 opened Apr 26, 2022 by vinjana
Move fingerprinting into pipeline
#67 opened Sep 14, 2021 by vinjana
bwa-mem2 support
#66 opened Sep 14, 2021 by vinjana
Check wait -n for task management in bash code
#65 opened Sep 14, 2021 by vinjana
Filename length restriction in R diffchrom script bug Something isn't working
#63 opened Jul 13, 2021 by vinjana
@GWarsow
2
Lift methylation meta job to WFMS level
#62 opened Jun 25, 2021 by vinjana
Calculate target region size from TARGET_REGION_FILE
#58 opened Nov 5, 2019 by vinjana
Tagmentation WGS and WES
#54 opened Jun 26, 2019 by vinjana
Better IO checks in Perl scripts
#53 opened Jun 18, 2019 by vinjana
Merge without duplication marking
#52 opened Jun 18, 2019 by vinjana
Allow setting the number of bases at read start that should should be ignored for conversion statistics
#48 opened Mar 14, 2019 by vinjana
Add collected ambiguously classified undirected WGBS reads in QC-JSON
#47 opened Feb 15, 2019 by vinjana
Move Bash library code to DefaultPlugin or own repo
#46 opened Feb 15, 2019 by vinjana
1
Switch PID registry to associative array
#45 opened Feb 15, 2019 by vinjana
Process data from object storage
#41 opened Jan 16, 2019 by vinjana
Single-end alignment
#40 opened Jan 16, 2019 by vinjana
Make output MultiQC-compatible
#39 opened Jan 16, 2019 by vinjana
Safer online QC statistics on the SAM output stream for post-mortem analysis of alignment (or other processes)
#37 opened Nov 15, 2018 by vinjana
Merge Methylation Calls per library instead of performing methylation calling on merged bam
#36 opened Nov 15, 2018 by vinjana
Handle incremental addition of new lanes when dealing with multiple sequencing libraries
#35 opened Nov 15, 2018 by vinjana
ProTip! Updated in the last three days: updated:>2024-12-18.