Merge pull request #118 from DE-RSE/ror

add ROR to affiliations
DE-RSE · Feb 13, 2025 · 6537c2d · 6537c2d
2 parents 24fc089 + 567f23b
commit 6537c2d
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Showing 5 changed files with 123 additions and 19 deletions.
diff --git a/contributors.py b/contributors.py
@@ -15,10 +15,17 @@
 for author in data["authors"]:
     if 'affiliations' in author:
         affiliations.extend(author["affiliations"])
-data["affiliations"] = {aff: i + 1 for i, aff in enumerate(list(dict.fromkeys(affiliations)))}
+# make sure affiliations are not duplicated - here by checking for exact name string
+affiliations = list({aff['name']: aff for aff in affiliations}.values())
+
+# create and add unique index and also a reverse lookup table
+data["affiliations"] = {i + 1: aff for i, aff in enumerate(affiliations)}
+aff_index_by_name    = {aff['name']: i for i, aff in data["affiliations"].items()}
+
+# attach index to authors
 for author in data["authors"]:
     if 'affiliations' in author:
-        author["affiliations"] = [data["affiliations"][aff] for aff in author["affiliations"]]
+        author["affiliations"] = [aff_index_by_name[aff['name']] for aff in author["affiliations"]]
 
 env = jinja2.Environment(
    loader=jinja2.FileSystemLoader(os.getcwd()),

diff --git a/contributors.tex.j2 b/contributors.tex.j2
@@ -8,6 +8,6 @@
 {%- for author in data.authors %}
 \author[{% if author.affiliations %}{{ author.affiliations|join(", ") }}{% endif %}]{{ "{" }}{{ author.author }}{% if author.orcid is defined %}\texorpdfstring{\thinspace\orcidlink{ {{-author.orcid-}} }}{}{% endif %}{{ "}" }}
 {%- endfor %}
-{%- for affiliation, index in data.affiliations.items() %}
-\affil[{{ index }}]{{ "{" }}{{ affiliation }}{{ "}" }}
+{%- for index, affiliation in data.affiliations.items() %}
+\affil[{{ index }}]{{ "{" }}{{ affiliation.name }}{% if affiliation.ror is defined %}\texorpdfstring{\thinspace\rorlink{ {{-affiliation.ror-}} }} {}{% endif %}{{ "}" }}
 {%- endfor %}
diff --git a/contributors.yml b/contributors.yml
@@ -4,15 +4,17 @@ authors:
     lastName: Ankenbrandt
     initials: MJA
     affiliations:
-      - Center for Computational and Theoretical Biology, University of Würzburg, Germany
+      - name: Center for Computational and Theoretical Biology, University of Würzburg, Germany
+        ror: https://ror.org/00fbnyb24
     orcid: 0000-0002-6620-807X
 
   - author: "Leyla Jael Castro"
     firstName: Leyla Jael
     lastName: Castro
     initials: LC
     affiliations:
-      - Semantic Technologies team, ZB MED Information Centre for Life Sciences, Germany
+      - name: Semantic Technologies team, ZB MED Information Centre for Life Sciences, Germany
+        ror: https://ror.org/0259fwx54
     orcid: 0000-0003-3986-0510
     email: ljgarcia@zbmed.de
 
@@ -21,7 +23,8 @@ authors:
     lastName: Caspart
     initials: RC
     affiliations:
-      - Scientific Computing Center, Karlsruher Institut für Technologie, Germany
+      - name: Scientific Computing Center, Karlsruher Institut für Technologie, Germany
+        ror: https://ror.org/04t3en479
     orcid: 0000-0002-5502-9412
     tier: 1
 
@@ -30,7 +33,8 @@ authors:
     lastName: Flemisch
     initials: BF
     affiliations:
-      - Institute for Modelling Hydraulic and Environmental Systems, University of Stuttgart, Germany
+      - name: Institute for Modelling Hydraulic and Environmental Systems, University of Stuttgart, Germany
+        ror: https://ror.org/04vnq7t77
     orcid: 0000-0001-8188-620X
     email: bernd@iws.uni-stuttgart.de
     tier: 1
@@ -40,7 +44,8 @@ authors:
     lastName: Goth
     initials: FG
     affiliations:
-      - Institute for Theoretical Physics and Astrophysics, University of Würzburg, Germany
+      - name: Institute for Theoretical Physics and Astrophysics, University of Würzburg, Germany
+        ror: https://ror.org/00fbnyb24
     orcid: 0000-0003-2707-4790
     email: florian.goth@uni-wuerzburg.de
     acknowledgements: |
@@ -54,7 +59,8 @@ authors:
     lastName: Grad
     initials: JNG
     affiliations:
-      - Institute for Computational Physics, University of Stuttgart, Germany
+      - name: Institute for Computational Physics, University of Stuttgart, Germany
+        ror: https://ror.org/04vnq7t77
     orcid: 0000-0002-5821-4912
     email: jgrad@icp.uni-stuttgart.de
     acknowledgements: |
@@ -73,7 +79,8 @@ authors:
     lastName: Hagdorn
     initials: MH
     affiliations:
-      - Geschäftsbereich IT, Charité Universitätsmedizin Berlin, Germany
+      - name: Geschäftsbereich IT, Charité Universitätsmedizin Berlin, Germany
+        ror: https://ror.org/001w7jn25
     orcid: 0000-0002-5076-4864
     email: magnus.hagdorn@charite.de
 
@@ -82,7 +89,8 @@ authors:
     lastName: Kempf
     initials: DK
     affiliations:
-      - Heidelberg University, Scientific Software Center, Germany
+      - name: Heidelberg University, Scientific Software Center, Germany
+        ror: https://ror.org/038t36y30
     orcid: 0000-0002-6140-2332
     email: dominic.kempf@iwr.uni-heidelberg.de
     acknowledgements: |
@@ -95,7 +103,8 @@ authors:
     lastName: Linxweiler
     initials: JL
     affiliations:
-      - Technische Universität Braunschweig, Germany
+      - name: Technische Universität Braunschweig, Germany
+        ror: https://ror.org/010nsgg66
     orcid: 0000-0002-2755-5087
     email: j.linxweiler@tu-braunschweig.de
     tier: 1
@@ -105,7 +114,8 @@ authors:
     lastName: Loewe
     initials: AL
     affiliations:
-      - Karlsruhre Institute of Technology (KIT)
+      - name: Karlsruhre Institute of Technology (KIT)
+        ror: https://ror.org/04t3en479
     orcid: 0000-0002-2487-4744
     email: axel.loewe@kit.edu
 
@@ -114,7 +124,8 @@ authors:
     lastName: Löffler
     initials: FL
     affiliations:
-      - Competence Center Digital Research, Friedrich Schiller University Jena, Germany
+      - name: Competence Center Digital Research, Friedrich Schiller University Jena, Germany
+        ror: https://ror.org/05qpz1x62
     orcid: 0000-0001-6643-6323
     email: frank.loeffler@uni-jena.de
     tier: 1
@@ -124,7 +135,8 @@ authors:
     lastName: Schäfer
     initials: PMS
     affiliations:
-      - Competence Center Digital Research, Friedrich Schiller University Jena, Germany
+      - name: Competence Center Digital Research, Friedrich Schiller University Jena, Germany
+        ror: https://ror.org/05qpz1x62
     orcid: 0000-0003-3931-6670
     email: philipp.matthias.schaefer@uni-jena.de
     tier: 1
@@ -134,7 +146,8 @@ authors:
     lastName: Sommer
     initials: PS
     affiliations:
-      - Institute of Carbon Cycles, Helmholtz Coastal Data Center, Helmholtz-Zentrum Hereon, Germany
+      - name: Institute of Carbon Cycles, Helmholtz Coastal Data Center, Helmholtz-Zentrum Hereon, Germany
+        ror: https://ror.org/03qjp1d79
     orcid: 0000-0001-6171-7716
     email: philipp.sommer@hereon.de
 
@@ -143,7 +156,8 @@ authors:
     lastName: Speck
     initials: RS
     affiliations:
-      - Jülich Supercomputing Centre, Forschungszentrum Jülich GmbH, Germany
+      - name: Jülich Supercomputing Centre, Forschungszentrum Jülich GmbH, Germany
+        ror: https://ror.org/02nv7yv05
     orcid: 0000-0002-3879-1210
     email: r.speck@fz-juelich.de
     tier: 1
@@ -153,7 +167,8 @@ authors:
     lastName: Struck
     initials: AS
     affiliations:
-      - Cluster of Excellence Matters of Activity. Image Space Material at Humboldt-Universitaet zu Berlin
+      - name: Cluster of Excellence Matters of Activity. Image Space Material at Humboldt-Universitaet zu Berlin
+        ror: https://ror.org/01hcx6992
     orcid: 0000-0002-1173-9228
     email: alexander.struck@hu-berlin.de
     acknowledgements: |

diff --git a/paper.tex b/paper.tex
@@ -9,6 +9,7 @@
 
 \usepackage{libertine}
 \usepackage{orcidlink}
+\usepackage{rorlink}
 \renewcommand\Affilfont{\small}
 
 \usepackage{hyperref}

diff --git a/rorlink.sty b/rorlink.sty
@@ -0,0 +1,81 @@
+%%
+%% This is file `rorlink.sty',
+%% generated with the docstrip utility.
+%%
+%% The original source files were:
+%%
+%% rorlink.dtx  (with options: `package')
+%% 
+%% This is a generated file.
+%% 
+%% Copyright (C) 2023 by Florian Lukas <florian.lukas@dainst.de>
+%% --------------------------------------------------------------------------
+%% This work may be distributed and/or modified under the
+%% conditions of the LaTeX Project Public License, either version 1.3c
+%% of this license or (at your option) any later version.
+%% The latest version of this license is in
+%%   http://www.latex-project.org/lppl.txt
+%% and version 1.3c or later is part of all distributions of LaTeX
+%% version 2005/12/01 or later.
+%% 
+\NeedsTeXFormat{LaTeX2e}[1999/12/01]
+\ProvidesPackage{rorlink}
+    [2023/06/23 1.1.0 Linked ROR logo macro package]
+%% Required packages
+\RequirePackage{hyperref}
+\RequirePackage{tikz}
+\RequirePackage{xparse}
+\RequirePackage{etoolbox}
+%% Set standard color of the ROR institution
+\definecolor{rorlogocol}{HTML}{53BAA1}
+%% Set global option |blackwhite| for depicting the logo only in black and white.
+\DeclareOption{blackwhite}{\definecolor{rorlogocol}{HTML}{000000}}
+\DeclareOption*{\PackageWarning{rorlink}{Unknown option -- \CurrentOption --}}
+\ProcessOptions\relax
+%% Load tikz library for processing svg-paths.
+\usetikzlibrary{svg.path}
+%% The original svg-path received from the file \url{https://raw.githubusercontent.com/ror-community/ror-logos/main/ror-icon-rgb.svg}
+\tikzset{
+rorlogo/.pic={
+\fill[rorlogocol] svg{M68.65,4.16L56.52,22.74L44.38,4.16L68.65,4.16Z}
+svg{M119.41,4.16L107.28,22.74L95.14,4.16L119.41,4.16Z}
+svg{M44.38,115.47L56.52,96.88L68.65,115.47L44.38,115.47Z}
+svg{M95.14,115.47L107.28,96.88L119.41,115.47L95.14,115.47Z};
+\fill[black] svg{M145.53,63.71C149.83,62.91 153.1,61 155.33,57.99C157.57,54.98 158.68,51.32 158.68,47.03C158.68,43.47 158.06,40.51 156.83,38.13C155.6,35.75 153.93,33.86 151.84,32.45C149.75,31.05 147.31,30.04 144.53,29.44C141.75,28.84 138.81,28.54 135.72,28.54L112.16,28.54L112.16,47.37C111.97,46.82 111.77,46.28 111.55,45.74C109.92,41.79 107.64,38.42 104.71,35.64C101.78,32.86 98.32,30.72 94.3,29.23C90.29,27.74 85.9,26.99 81.14,26.99C76.38,26.99 72,27.74 67.98,29.23C63.97,30.72 60.5,32.86 57.57,35.64C54.95,38.13 52.85,41.1 51.27,44.54C51.04,42.07 50.46,39.93 49.53,38.13C48.3,35.75 46.63,33.86 44.54,32.45C42.45,31.05 40.01,30.04 37.23,29.44C34.45,28.84 31.51,28.54 28.42,28.54L4.87,28.54L4.87,89.42L18.28,89.42L18.28,65.08L24.9,65.08L37.63,89.42L53.71,89.42L38.24,63.71C42.54,62.91 45.81,61 48.04,57.99C48.14,57.85 48.23,57.7 48.33,57.56C48.31,58.03 48.3,58.5 48.3,58.98C48.3,63.85 49.12,68.27 50.75,72.22C52.38,76.17 54.66,79.54 57.59,82.32C60.51,85.1 63.98,87.24 68,88.73C72.01,90.22 76.4,90.97 81.16,90.97C85.92,90.97 90.3,90.22 94.32,88.73C98.33,87.24 101.8,85.1 104.73,82.32C107.65,79.54 109.93,76.17 111.57,72.22C111.79,71.69 111.99,71.14 112.18,70.59L112.18,89.42L125.59,89.42L125.59,65.08L132.21,65.08L144.94,89.42L161.02,89.42L145.53,63.71ZM36.39,50.81C35.67,51.73 34.77,52.4 33.68,52.83C32.59,53.26 31.37,53.52 30.03,53.6C28.68,53.69 27.41,53.73 26.2,53.73L18.29,53.73L18.29,39.89L27.06,39.89C28.26,39.89 29.5,39.98 30.76,40.15C32.02,40.32 33.14,40.65 34.11,41.14C35.08,41.63 35.89,42.33 36.52,43.25C37.15,44.17 37.47,45.4 37.47,46.95C37.47,48.6 37.11,49.89 36.39,50.81ZM98.74,66.85C97.85,69.23 96.58,71.29 94.91,73.04C93.25,74.79 91.26,76.15 88.93,77.13C86.61,78.11 84.01,78.59 81.15,78.59C78.28,78.59 75.69,78.1 73.37,77.13C71.05,76.16 69.06,74.79 67.39,73.04C65.73,71.29 64.45,69.23 63.56,66.85C62.67,64.47 62.23,61.85 62.23,58.98C62.23,56.17 62.67,53.56 63.56,51.15C64.45,48.74 65.72,46.67 67.39,44.92C69.05,43.17 71.04,41.81 73.37,40.83C75.69,39.86 78.28,39.37 81.15,39.37C84.02,39.37 86.61,39.86 88.93,40.83C91.25,41.8 93.24,43.17 94.91,44.92C96.57,46.67 97.85,48.75 98.74,51.15C99.63,53.56 100.07,56.17 100.07,58.98C100.07,61.85 99.63,64.47 98.74,66.85ZM143.68,50.81C142.96,51.73 142.06,52.4 140.97,52.83C139.88,53.26 138.66,53.52 137.32,53.6C135.97,53.69 134.7,53.73 133.49,53.73L125.58,53.73L125.58,39.89L134.35,39.89C135.55,39.89 136.79,39.98 138.05,40.15C139.31,40.32 140.43,40.65 141.4,41.14C142.37,41.63 143.18,42.33 143.81,43.25C144.44,44.17 144.76,45.4 144.76,46.95C144.76,48.6 144.4,49.89 143.68,50.81Z};
+}
+}
+%% The original height of the svg file is 119.27pt. The macro here uses 1/119.27 as unit.
+\newcommand{\@OrigHeightRecipROR}{0.008384338}
+%% The logo is adjusted to the used font size and an optional option |blackwhite| for depicting the logo in only black and white colors is set.
+\newlength{\@curXheightROR}
+\DeclareDocumentCommand\rorlink{om}{%
+\IfNoValueTF{#1}{%
+\texorpdfstring{%
+\setlength{\@curXheightROR}{\fontcharht\font`X}%
+\href{#2}{\XeTeXLinkBox{\mbox{%
+\begin{tikzpicture}[yscale=-\@OrigHeightRecipROR*\@curXheightROR,%
+xscale=\@OrigHeightRecipROR*\@curXheightROR,transform shape]%
+\pic{rorlogo};%
+\end{tikzpicture}%
+}}}}{}%
+}{%
+\ifstrequal{#1}{blackwhite}{%
+\begingroup%
+\definecolor{rorlogocol}{HTML}{000000}
+\texorpdfstring{%
+\setlength{\@curXheightROR}{\fontcharht\font`X}%
+\href{#2}{\XeTeXLinkBox{\mbox{%
+\begin{tikzpicture}[yscale=-\@OrigHeightRecipROR*\@curXheightROR,%
+xscale=\@OrigHeightRecipROR*\@curXheightROR,transform shape]%
+\pic{rorlogo};%
+\end{tikzpicture}%
+}}}}{}%
+\endgroup%
+}{\PackageWarning{rorlink}{The defined optional argument is unknown, thus, set to blank.}{\rorlink{#2}}}%
+}%
+}%
+\endinput%    \end{macrocode}
+
+\endinput
+%%
+%% End of file `rorlink.sty'.