-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathrequirements.txt
68 lines (60 loc) · 5.25 KB
/
requirements.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
##################
##R requirements##
##################
> sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Rocky Linux 8.6 (Green Obsidian)
Matrix products: default
BLAS/LAPACK: /data/sz753404/miniconda3/envs/seurat3.1_bak/lib/libopenblasp-r0.3.12.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=de_DE.UTF-8 LC_COLLATE=en_US.UTF-8 LC_MONETARY=de_DE.UTF-8
[6] LC_MESSAGES=en_US.UTF-8 LC_PAPER=de_DE.UTF-8 LC_NAME=C LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] grid stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] Rmagic_2.0.3 genomation_1.22.0 Gviz_1.34.1 Cairo_1.5-12.2
[5] fclust_2.1.1 RANN_2.6.1 Rcpp_1.0.6 yaml_2.2.1
[9] SummarizedExperiment_1.20.0 Biobase_2.50.0 MatrixGenerics_1.2.1 matrixStats_0.58.0
[13] Rsamtools_2.6.0 circlize_0.4.12 ggrepel_0.9.1 tibble_3.0.6
[17] ComplexHeatmap_2.6.2 RColorBrewer_1.1-2 reshape2_1.4.4 optparse_1.6.6
[21] patchwork_1.1.1 BSgenome.Mmusculus.UCSC.mm10_1.4.0 BSgenome_1.58.0 rtracklayer_1.50.0
[25] Biostrings_2.58.0 XVector_0.30.0 doParallel_1.0.16 iterators_1.0.13
[29] foreach_1.5.1 future.apply_1.7.0 future_1.21.0 reticulate_1.18
[33] glue_1.6.2 data.table_1.13.6 GenomicRanges_1.42.0 viridis_0.5.1
[37] viridisLite_0.3.0 WriteXLS_6.1.0 gridExtra_2.3 cowplot_1.1.1
[41] mclust_5.4.7 clustree_0.4.3 ggraph_2.0.4 cluster_2.1.0
[45] GenomeInfoDb_1.26.7 IRanges_2.24.1 S4Vectors_0.28.1 BiocGenerics_0.36.0
[49] plotly_4.9.3 dplyr_1.0.9 tidyr_1.1.2 Matrix_1.3-2
[53] readr_1.4.0 magrittr_2.0.1 stringr_1.4.0 ggplot2_3.3.3
loaded via a namespace (and not attached):
[1] utf8_1.1.4 tidyselect_1.1.2 RSQLite_2.2.3 AnnotationDbi_1.52.0 htmlwidgets_1.5.3 BiocParallel_1.24.1
[7] munsell_0.5.0 codetools_0.2-18 withr_2.4.1 colorspace_2.0-0 knitr_1.31 rstudioapi_0.13
[13] listenv_0.8.0 GenomeInfoDbData_1.2.4 polyclip_1.10-0 seqPattern_1.22.0 bit64_4.0.5 farver_2.0.3
[19] parallelly_1.23.0 vctrs_0.4.1 generics_0.1.0 xfun_0.20 biovizBase_1.38.0 BiocFileCache_1.14.0
[25] R6_2.5.0 clue_0.3-58 graphlayouts_0.7.1 AnnotationFilter_1.14.0 bitops_1.0-6 cachem_1.0.3
[31] DelayedArray_0.16.1 assertthat_0.2.1 scales_1.1.1 nnet_7.3-15 gtable_0.3.0 globals_0.14.0
[37] tidygraph_1.2.0 ensembldb_2.14.1 rlang_1.0.2 GlobalOptions_0.1.2 splines_4.0.3 lazyeval_0.2.2
[43] impute_1.64.0 dichromat_2.0-0.1 checkmate_2.0.0 BiocManager_1.30.10 GenomicFeatures_1.42.3 backports_1.2.1
[49] Hmisc_4.4-2 tools_4.0.3 gridBase_0.4-7 ellipsis_0.3.2 plyr_1.8.6 base64enc_0.1-3
[55] progress_1.2.2 zlibbioc_1.36.0 purrr_0.3.4 RCurl_1.98-1.2 prettyunits_1.1.1 rpart_4.1-15
[61] openssl_1.4.3 GetoptLong_1.0.5 ProtGenerics_1.22.0 hms_1.0.0 XML_3.99-0.5 jpeg_0.1-8.1
[67] shape_1.4.5 compiler_4.0.3 biomaRt_2.46.3 KernSmooth_2.23-18 crayon_1.4.0 htmltools_0.5.1.1
[73] Formula_1.2-4 DBI_1.1.1 tweenr_1.0.1 dbplyr_2.2.0 MASS_7.3-53 rappdirs_0.3.3
[79] getopt_1.20.3 cli_3.3.0 igraph_1.2.6 pkgconfig_2.0.3 GenomicAlignments_1.26.0 foreign_0.8-81
[85] xml2_1.3.2 VariantAnnotation_1.36.0 digest_0.6.27 htmlTable_2.1.0 curl_4.3 rjson_0.2.20
[91] lifecycle_1.0.1 jsonlite_1.7.2 askpass_1.1 fansi_0.4.2 pillar_1.7.0 lattice_0.20-41
[97] plotrix_3.8-2 fastmap_1.1.0 httr_1.4.2 survival_3.2-7 png_0.1-7 bit_4.0.4
[103] ggforce_0.3.2 stringi_1.5.3 blob_1.2.1 latticeExtra_0.6-29 memoise_2.0.0
#######################
##python requirements##
#######################
csv==1.0
pysam==0.16.0.1
scanpy==1.8.2
numpy==1.21.2
pandas==1.3.4
anndata==0.7.6
matplotlib==3.4.4
anndata==0.7.6