diff --git a/.constraints/py3.10.txt b/.constraints/py3.10.txt index 0770906a..ce718bab 100644 --- a/.constraints/py3.10.txt +++ b/.constraints/py3.10.txt @@ -2,61 +2,59 @@ # This file is autogenerated by pip-compile with Python 3.10 # by the following command: # -# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.10.txt --strip-extras +# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.10.txt --strip-extras --unsafe-package=compwa-org --unsafe-package=pip --unsafe-package=setuptools # accessible-pygments==0.0.4 -aiofiles==22.1.0 -aiosqlite==0.19.0 alabaster==0.7.13 anyio==4.0.0 argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 -arrow==1.2.3 +arrow==1.3.0 asttokens==2.4.0 +async-lru==2.0.4 attrs==23.1.0 -babel==2.12.1 +babel==2.13.0 backcall==0.2.0 beautifulsoup4==4.12.2 black==23.9.1 -bleach==6.0.0 +bleach==6.1.0 cachetools==5.3.1 certifi==2023.7.22 -cffi==1.15.1 +cffi==1.16.0 cfgv==3.4.0 chardet==5.2.0 -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 click==8.1.7 colorama==0.4.6 comm==0.1.4 contourpy==1.1.1 -cycler==0.11.0 +cycler==0.12.1 debugpy==1.8.0 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.7 docstring-to-markdown==0.12 docutils==0.17.1 -entrypoints==0.4 exceptiongroup==1.1.3 -executing==1.2.0 -fastjsonschema==2.18.0 +executing==2.0.0 +fastjsonschema==2.18.1 filelock==3.12.4 -fonttools==4.42.1 +fonttools==4.43.1 fqdn==1.5.1 graphviz==0.20.1 -greenlet==2.0.2 -identify==2.5.29 +greenlet==3.0.0 +identify==2.5.30 idna==3.4 imagesize==1.4.1 importlib-metadata==6.8.0 iniconfig==2.0.0 ipykernel==6.25.2 ipympl==0.9.3 -ipython==8.15.0 +ipython==8.16.1 ipython-genutils==0.2.0 ipywidgets==8.1.1 isoduration==20.11.0 -jedi==0.19.0 +jedi==0.19.1 jinja2==3.1.2 json5==0.9.14 jsonpointer==2.4 @@ -64,19 +62,16 @@ jsonschema==4.19.1 jsonschema-specifications==2023.7.1 jupyter==1.0.0 jupyter-cache==0.6.1 -jupyter-client==7.4.9 +jupyter-client==8.3.1 jupyter-console==6.6.3 -jupyter-core==5.3.1 +jupyter-core==5.3.2 jupyter-events==0.7.0 jupyter-lsp==2.2.0 jupyter-server==2.7.3 -jupyter-server-fileid==0.9.0 jupyter-server-terminals==0.4.4 -jupyter-server-ydoc==0.8.0 -jupyter-ydoc==0.2.5 -jupyterlab==3.6.6 +jupyterlab==4.0.6 jupyterlab-code-formatter==2.2.1 -jupyterlab-lsp==4.3.0 +jupyterlab-lsp==5.0.0 jupyterlab-myst==2.0.2 jupyterlab-pygments==0.2.2 jupyterlab-server==2.25.0 @@ -90,30 +85,29 @@ matplotlib==3.8.0 matplotlib-inline==0.1.6 mdit-py-plugins==0.3.5 mdurl==0.1.2 -mistune==3.0.1 +mistune==3.0.2 mpl-interactions==0.23.2 mypy-extensions==1.0.0 myst-nb==0.17.2 myst-parser==0.18.1 -nbclassic==1.0.0 nbclient==0.6.8 -nbconvert==7.8.0 +nbconvert==7.9.2 nbformat==5.9.2 -nbmake==1.4.3 +nbmake==1.4.5 nest-asyncio==1.5.8 nodeenv==1.8.0 -notebook==6.5.6 +notebook==7.0.4 notebook-shim==0.2.3 numpy==1.26.0 overrides==7.4.0 -packaging==23.1 +packaging==23.2 pandocfilters==1.5.0 parso==0.8.3 pathspec==0.11.2 pexpect==4.8.0 pickleshare==0.7.5 pillow==10.0.1 -platformdirs==3.10.0 +platformdirs==3.11.0 pluggy==1.3.0 pre-commit==3.4.0 prometheus-client==0.17.1 @@ -132,19 +126,19 @@ pytest==7.4.2 python-dateutil==2.8.2 python-json-logger==2.0.7 python-lsp-jsonrpc==1.1.2 -python-lsp-server==1.8.0 +python-lsp-server==1.8.2 pytoolconfig==1.2.5 pyyaml==6.0.1 -pyzmq==24.0.1 +pyzmq==25.1.1 qtconsole==5.4.4 qtpy==2.4.0 referencing==0.30.2 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rope==1.9.0 -rpds-py==0.10.3 -ruff==0.0.291 +rope==1.10.0 +rpds-py==0.10.4 +ruff==0.0.292 send2trash==1.8.2 six==1.16.0 sniffio==1.3.0 @@ -157,40 +151,40 @@ sphinx-codeautolink==0.15.0 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.5.0 +sphinx-hep-pdgref==0.2.0 sphinx-remove-toctrees==0.0.3 sphinx-thebe==0.2.1 sphinx-togglebutton==0.3.2 sphinxcontrib-applehelp==1.0.7 sphinxcontrib-bibtex==2.6.1 sphinxcontrib-devhelp==1.0.5 -sphinxcontrib-hep-pdgref==0.1.4 sphinxcontrib-htmlhelp==2.0.4 sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.6 sphinxcontrib-serializinghtml==1.1.9 sqlalchemy==2.0.21 -stack-data==0.6.2 +stack-data==0.6.3 tabulate==0.9.0 terminado==0.17.1 tinycss2==1.2.1 tomli==2.0.1 tornado==6.3.3 tox==4.11.3 -traitlets==5.10.1 +traitlets==5.11.2 +types-python-dateutil==2.8.19.14 typing-extensions==4.8.0 ujson==5.8.0 uri-template==1.3.0 -urllib3==2.0.5 +urllib3==2.0.6 virtualenv==20.24.5 -wcwidth==0.2.6 +wcwidth==0.2.8 webcolors==1.13 webencodings==0.5.1 -websocket-client==1.6.3 +websocket-client==1.6.4 wheel==0.41.2 widgetsnbextension==4.0.9 -y-py==0.6.0 -ypy-websocket==0.8.4 zipp==3.17.0 # The following packages are considered to be unsafe in a requirements file: +# compwa-org # setuptools diff --git a/.constraints/py3.11.txt b/.constraints/py3.11.txt index 2d8b414d..e46a7b85 100644 --- a/.constraints/py3.11.txt +++ b/.constraints/py3.11.txt @@ -2,60 +2,58 @@ # This file is autogenerated by pip-compile with Python 3.11 # by the following command: # -# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.11.txt --strip-extras +# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.11.txt --strip-extras --unsafe-package=compwa-org --unsafe-package=pip --unsafe-package=setuptools # accessible-pygments==0.0.4 -aiofiles==22.1.0 -aiosqlite==0.19.0 alabaster==0.7.13 anyio==4.0.0 argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 -arrow==1.2.3 +arrow==1.3.0 asttokens==2.4.0 +async-lru==2.0.4 attrs==23.1.0 -babel==2.12.1 +babel==2.13.0 backcall==0.2.0 beautifulsoup4==4.12.2 black==23.9.1 -bleach==6.0.0 +bleach==6.1.0 cachetools==5.3.1 certifi==2023.7.22 -cffi==1.15.1 +cffi==1.16.0 cfgv==3.4.0 chardet==5.2.0 -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 click==8.1.7 colorama==0.4.6 comm==0.1.4 contourpy==1.1.1 -cycler==0.11.0 +cycler==0.12.1 debugpy==1.8.0 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.7 docstring-to-markdown==0.12 docutils==0.17.1 -entrypoints==0.4 -executing==1.2.0 -fastjsonschema==2.18.0 +executing==2.0.0 +fastjsonschema==2.18.1 filelock==3.12.4 -fonttools==4.42.1 +fonttools==4.43.1 fqdn==1.5.1 graphviz==0.20.1 -greenlet==2.0.2 -identify==2.5.29 +greenlet==3.0.0 +identify==2.5.30 idna==3.4 imagesize==1.4.1 importlib-metadata==6.8.0 iniconfig==2.0.0 ipykernel==6.25.2 ipympl==0.9.3 -ipython==8.15.0 +ipython==8.16.1 ipython-genutils==0.2.0 ipywidgets==8.1.1 isoduration==20.11.0 -jedi==0.19.0 +jedi==0.19.1 jinja2==3.1.2 json5==0.9.14 jsonpointer==2.4 @@ -63,19 +61,16 @@ jsonschema==4.19.1 jsonschema-specifications==2023.7.1 jupyter==1.0.0 jupyter-cache==0.6.1 -jupyter-client==7.4.9 +jupyter-client==8.3.1 jupyter-console==6.6.3 -jupyter-core==5.3.1 +jupyter-core==5.3.2 jupyter-events==0.7.0 jupyter-lsp==2.2.0 jupyter-server==2.7.3 -jupyter-server-fileid==0.9.0 jupyter-server-terminals==0.4.4 -jupyter-server-ydoc==0.8.0 -jupyter-ydoc==0.2.5 -jupyterlab==3.6.6 +jupyterlab==4.0.6 jupyterlab-code-formatter==2.2.1 -jupyterlab-lsp==4.3.0 +jupyterlab-lsp==5.0.0 jupyterlab-myst==2.0.2 jupyterlab-pygments==0.2.2 jupyterlab-server==2.25.0 @@ -89,30 +84,29 @@ matplotlib==3.8.0 matplotlib-inline==0.1.6 mdit-py-plugins==0.3.5 mdurl==0.1.2 -mistune==3.0.1 +mistune==3.0.2 mpl-interactions==0.23.2 mypy-extensions==1.0.0 myst-nb==0.17.2 myst-parser==0.18.1 -nbclassic==1.0.0 nbclient==0.6.8 -nbconvert==7.8.0 +nbconvert==7.9.2 nbformat==5.9.2 -nbmake==1.4.3 +nbmake==1.4.5 nest-asyncio==1.5.8 nodeenv==1.8.0 -notebook==6.5.6 +notebook==7.0.4 notebook-shim==0.2.3 numpy==1.26.0 overrides==7.4.0 -packaging==23.1 +packaging==23.2 pandocfilters==1.5.0 parso==0.8.3 pathspec==0.11.2 pexpect==4.8.0 pickleshare==0.7.5 pillow==10.0.1 -platformdirs==3.10.0 +platformdirs==3.11.0 pluggy==1.3.0 pre-commit==3.4.0 prometheus-client==0.17.1 @@ -131,19 +125,19 @@ pytest==7.4.2 python-dateutil==2.8.2 python-json-logger==2.0.7 python-lsp-jsonrpc==1.1.2 -python-lsp-server==1.8.0 +python-lsp-server==1.8.2 pytoolconfig==1.2.5 pyyaml==6.0.1 -pyzmq==24.0.1 +pyzmq==25.1.1 qtconsole==5.4.4 qtpy==2.4.0 referencing==0.30.2 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rope==1.9.0 -rpds-py==0.10.3 -ruff==0.0.291 +rope==1.10.0 +rpds-py==0.10.4 +ruff==0.0.292 send2trash==1.8.2 six==1.16.0 sniffio==1.3.0 @@ -156,39 +150,39 @@ sphinx-codeautolink==0.15.0 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.5.0 +sphinx-hep-pdgref==0.2.0 sphinx-remove-toctrees==0.0.3 sphinx-thebe==0.2.1 sphinx-togglebutton==0.3.2 sphinxcontrib-applehelp==1.0.7 sphinxcontrib-bibtex==2.6.1 sphinxcontrib-devhelp==1.0.5 -sphinxcontrib-hep-pdgref==0.1.4 sphinxcontrib-htmlhelp==2.0.4 sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.6 sphinxcontrib-serializinghtml==1.1.9 sqlalchemy==2.0.21 -stack-data==0.6.2 +stack-data==0.6.3 tabulate==0.9.0 terminado==0.17.1 tinycss2==1.2.1 tornado==6.3.3 tox==4.11.3 -traitlets==5.10.1 +traitlets==5.11.2 +types-python-dateutil==2.8.19.14 typing-extensions==4.8.0 ujson==5.8.0 uri-template==1.3.0 -urllib3==2.0.5 +urllib3==2.0.6 virtualenv==20.24.5 -wcwidth==0.2.6 +wcwidth==0.2.8 webcolors==1.13 webencodings==0.5.1 -websocket-client==1.6.3 +websocket-client==1.6.4 wheel==0.41.2 widgetsnbextension==4.0.9 -y-py==0.6.0 -ypy-websocket==0.8.4 zipp==3.17.0 # The following packages are considered to be unsafe in a requirements file: +# compwa-org # setuptools diff --git a/.constraints/py3.7.txt b/.constraints/py3.7.txt index 69a5ab35..88318dd4 100644 --- a/.constraints/py3.7.txt +++ b/.constraints/py3.7.txt @@ -2,7 +2,7 @@ # This file is autogenerated by pip-compile with Python 3.7 # by the following command: # -# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.7.txt --resolver=backtracking --strip-extras +# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.7.txt --resolver=backtracking --strip-extras --unsafe-package=compwa-org --unsafe-package=pip --unsafe-package=setuptools # accessible-pygments==0.0.4 aiofiles==22.1.0 @@ -13,7 +13,7 @@ argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 arrow==1.2.3 attrs==23.1.0 -babel==2.12.1 +babel==2.13.0 backcall==0.2.0 beautifulsoup4==4.12.2 black==23.3.0 @@ -24,7 +24,7 @@ certifi==2023.7.22 cffi==1.15.1 cfgv==3.3.1 chardet==5.2.0 -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 click==8.1.7 colorama==0.4.6 comm==0.1.4 @@ -37,12 +37,12 @@ docstring-to-markdown==0.12 docutils==0.17.1 entrypoints==0.4 exceptiongroup==1.1.3 -fastjsonschema==2.18.0 +fastjsonschema==2.18.1 filelock==3.12.2 fonttools==4.38.0 fqdn==1.5.1 graphviz==0.20.1 -greenlet==2.0.2 +greenlet==3.0.0 identify==2.5.24 idna==3.4 imagesize==1.4.1 @@ -87,7 +87,7 @@ matplotlib==3.5.3 matplotlib-inline==0.1.6 mdit-py-plugins==0.3.5 mdurl==0.1.2 -mistune==3.0.1 +mistune==3.0.2 mpl-interactions==0.23.2 mypy-extensions==1.0.0 myst-nb==0.17.2 @@ -96,13 +96,13 @@ nbclassic==1.0.0 nbclient==0.5.13 nbconvert==7.6.0 nbformat==5.8.0 -nbmake==1.2.1 ; python_version == "3.7.*" +nbmake==1.2.1 nest-asyncio==1.5.8 nodeenv==1.8.0 notebook==6.5.6 notebook-shim==0.2.3 numpy==1.21.6 -packaging==23.1 +packaging==23.2 pandocfilters==1.5.0 parso==0.8.3 pathspec==0.11.2 @@ -110,7 +110,7 @@ pexpect==4.8.0 pickleshare==0.7.5 pillow==9.5.0 pkgutil-resolve-name==1.3.10 -platformdirs==3.10.0 +platformdirs==3.11.0 pluggy==1.2.0 pre-commit==2.21.0 prometheus-client==0.17.1 @@ -120,7 +120,7 @@ ptyprocess==0.7.0 pybtex==0.24.0 pybtex-docutils==1.0.3 pycparser==2.21 -pydantic==1.10.12 +pydantic==1.10.13 pydata-sphinx-theme==0.13.3 pygments==2.16.1 pyparsing==3.1.1 @@ -141,7 +141,7 @@ requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 rope==1.9.0 -ruff==0.0.291 +ruff==0.0.292 send2trash==1.8.2 six==1.16.0 sniffio==1.3.0 @@ -154,13 +154,13 @@ sphinx-codeautolink==0.15.0 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.4.1 +sphinx-hep-pdgref==0.2.0 sphinx-remove-toctrees==0.0.3 sphinx-thebe==0.2.1 sphinx-togglebutton==0.3.2 sphinxcontrib-applehelp==1.0.2 sphinxcontrib-bibtex==2.6.1 sphinxcontrib-devhelp==1.0.2 -sphinxcontrib-hep-pdgref==0.1.4 sphinxcontrib-htmlhelp==2.0.0 sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.3 @@ -177,17 +177,18 @@ typed-ast==1.5.5 typing-extensions==4.7.1 ujson==5.7.0 uri-template==1.3.0 -urllib3==2.0.5 +urllib3==2.0.6 virtualenv==20.24.5 -wcwidth==0.2.6 +wcwidth==0.2.8 webcolors==1.13 webencodings==0.5.1 websocket-client==1.6.1 wheel==0.41.2 widgetsnbextension==4.0.9 y-py==0.5.9 -ypy-websocket==0.8.2 ; python_version < "3.8.0" +ypy-websocket==0.8.2 zipp==3.15.0 # The following packages are considered to be unsafe in a requirements file: +# compwa-org # setuptools diff --git a/.constraints/py3.8.txt b/.constraints/py3.8.txt index f8d820b0..64b4abb5 100644 --- a/.constraints/py3.8.txt +++ b/.constraints/py3.8.txt @@ -2,50 +2,48 @@ # This file is autogenerated by pip-compile with Python 3.8 # by the following command: # -# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.8.txt --strip-extras +# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.8.txt --strip-extras --unsafe-package=compwa-org --unsafe-package=pip --unsafe-package=setuptools # accessible-pygments==0.0.4 -aiofiles==22.1.0 -aiosqlite==0.19.0 alabaster==0.7.13 anyio==4.0.0 argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 -arrow==1.2.3 +arrow==1.3.0 asttokens==2.4.0 +async-lru==2.0.4 attrs==23.1.0 -babel==2.12.1 +babel==2.13.0 backcall==0.2.0 beautifulsoup4==4.12.2 black==23.9.1 -bleach==6.0.0 +bleach==6.1.0 cachetools==5.3.1 certifi==2023.7.22 -cffi==1.15.1 +cffi==1.16.0 cfgv==3.4.0 chardet==5.2.0 -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 click==8.1.7 colorama==0.4.6 comm==0.1.4 contourpy==1.1.1 -cycler==0.11.0 +cycler==0.12.1 debugpy==1.8.0 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.7 docstring-to-markdown==0.12 docutils==0.17.1 -entrypoints==0.4 exceptiongroup==1.1.3 -executing==1.2.0 -fastjsonschema==2.18.0 +executing==2.0.0 +fastjsonschema==2.18.1 filelock==3.12.4 -fonttools==4.42.1 +fonttools==4.43.1 fqdn==1.5.1 graphviz==0.20.1 -greenlet==2.0.2 -identify==2.5.29 +greenlet==3.0.0 +identify==2.5.30 idna==3.4 imagesize==1.4.1 importlib-metadata==6.8.0 @@ -53,11 +51,11 @@ importlib-resources==6.1.0 iniconfig==2.0.0 ipykernel==6.25.2 ipympl==0.9.3 -ipython==8.12.2 +ipython==8.12.3 ipython-genutils==0.2.0 ipywidgets==8.1.1 isoduration==20.11.0 -jedi==0.19.0 +jedi==0.19.1 jinja2==3.1.2 json5==0.9.14 jsonpointer==2.4 @@ -65,19 +63,16 @@ jsonschema==4.19.1 jsonschema-specifications==2023.7.1 jupyter==1.0.0 jupyter-cache==0.6.1 -jupyter-client==7.4.9 +jupyter-client==8.3.1 jupyter-console==6.6.3 -jupyter-core==5.3.1 +jupyter-core==5.3.2 jupyter-events==0.7.0 jupyter-lsp==2.2.0 jupyter-server==2.7.3 -jupyter-server-fileid==0.9.0 jupyter-server-terminals==0.4.4 -jupyter-server-ydoc==0.8.0 -jupyter-ydoc==0.2.5 -jupyterlab==3.6.6 +jupyterlab==4.0.6 jupyterlab-code-formatter==2.2.1 -jupyterlab-lsp==4.3.0 +jupyterlab-lsp==5.0.0 jupyterlab-myst==2.0.2 jupyterlab-pygments==0.2.2 jupyterlab-server==2.25.0 @@ -91,23 +86,22 @@ matplotlib==3.7.3 matplotlib-inline==0.1.6 mdit-py-plugins==0.3.5 mdurl==0.1.2 -mistune==3.0.1 +mistune==3.0.2 mpl-interactions==0.23.2 mypy-extensions==1.0.0 myst-nb==0.17.2 myst-parser==0.18.1 -nbclassic==1.0.0 nbclient==0.6.8 -nbconvert==7.8.0 +nbconvert==7.9.2 nbformat==5.9.2 -nbmake==1.4.3 +nbmake==1.4.5 nest-asyncio==1.5.8 nodeenv==1.8.0 -notebook==6.5.6 +notebook==7.0.4 notebook-shim==0.2.3 numpy==1.24.4 overrides==7.4.0 -packaging==23.1 +packaging==23.2 pandocfilters==1.5.0 parso==0.8.3 pathspec==0.11.2 @@ -115,7 +109,7 @@ pexpect==4.8.0 pickleshare==0.7.5 pillow==10.0.1 pkgutil-resolve-name==1.3.10 -platformdirs==3.10.0 +platformdirs==3.11.0 pluggy==1.3.0 pre-commit==3.4.0 prometheus-client==0.17.1 @@ -134,20 +128,20 @@ pytest==7.4.2 python-dateutil==2.8.2 python-json-logger==2.0.7 python-lsp-jsonrpc==1.1.2 -python-lsp-server==1.8.0 +python-lsp-server==1.8.2 pytoolconfig==1.2.5 pytz==2023.3.post1 pyyaml==6.0.1 -pyzmq==24.0.1 +pyzmq==25.1.1 qtconsole==5.4.4 qtpy==2.4.0 referencing==0.30.2 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rope==1.9.0 -rpds-py==0.10.3 -ruff==0.0.291 +rope==1.10.0 +rpds-py==0.10.4 +ruff==0.0.292 send2trash==1.8.2 six==1.16.0 sniffio==1.3.0 @@ -160,40 +154,40 @@ sphinx-codeautolink==0.15.0 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.5.0 +sphinx-hep-pdgref==0.2.0 sphinx-remove-toctrees==0.0.3 sphinx-thebe==0.2.1 sphinx-togglebutton==0.3.2 sphinxcontrib-applehelp==1.0.4 sphinxcontrib-bibtex==2.6.1 sphinxcontrib-devhelp==1.0.2 -sphinxcontrib-hep-pdgref==0.1.4 sphinxcontrib-htmlhelp==2.0.1 sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.3 sphinxcontrib-serializinghtml==1.1.5 sqlalchemy==2.0.21 -stack-data==0.6.2 +stack-data==0.6.3 tabulate==0.9.0 terminado==0.17.1 tinycss2==1.2.1 tomli==2.0.1 tornado==6.3.3 tox==4.11.3 -traitlets==5.10.1 +traitlets==5.11.2 +types-python-dateutil==2.8.19.14 typing-extensions==4.8.0 ujson==5.8.0 uri-template==1.3.0 -urllib3==2.0.5 +urllib3==2.0.6 virtualenv==20.24.5 -wcwidth==0.2.6 +wcwidth==0.2.8 webcolors==1.13 webencodings==0.5.1 -websocket-client==1.6.3 +websocket-client==1.6.4 wheel==0.41.2 widgetsnbextension==4.0.9 -y-py==0.6.0 -ypy-websocket==0.8.4 zipp==3.17.0 # The following packages are considered to be unsafe in a requirements file: +# compwa-org # setuptools diff --git a/.constraints/py3.9.txt b/.constraints/py3.9.txt index 2c8a5bec..8b616965 100644 --- a/.constraints/py3.9.txt +++ b/.constraints/py3.9.txt @@ -2,50 +2,48 @@ # This file is autogenerated by pip-compile with Python 3.9 # by the following command: # -# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.9.txt --strip-extras +# pip-compile --extra=dev --no-annotate --output-file=.constraints/py3.9.txt --strip-extras --unsafe-package=compwa-org --unsafe-package=pip --unsafe-package=setuptools # accessible-pygments==0.0.4 -aiofiles==22.1.0 -aiosqlite==0.19.0 alabaster==0.7.13 anyio==4.0.0 argon2-cffi==23.1.0 argon2-cffi-bindings==21.2.0 -arrow==1.2.3 +arrow==1.3.0 asttokens==2.4.0 +async-lru==2.0.4 attrs==23.1.0 -babel==2.12.1 +babel==2.13.0 backcall==0.2.0 beautifulsoup4==4.12.2 black==23.9.1 -bleach==6.0.0 +bleach==6.1.0 cachetools==5.3.1 certifi==2023.7.22 -cffi==1.15.1 +cffi==1.16.0 cfgv==3.4.0 chardet==5.2.0 -charset-normalizer==3.2.0 +charset-normalizer==3.3.0 click==8.1.7 colorama==0.4.6 comm==0.1.4 contourpy==1.1.1 -cycler==0.11.0 +cycler==0.12.1 debugpy==1.8.0 decorator==5.1.1 defusedxml==0.7.1 distlib==0.3.7 docstring-to-markdown==0.12 docutils==0.17.1 -entrypoints==0.4 exceptiongroup==1.1.3 -executing==1.2.0 -fastjsonschema==2.18.0 +executing==2.0.0 +fastjsonschema==2.18.1 filelock==3.12.4 -fonttools==4.42.1 +fonttools==4.43.1 fqdn==1.5.1 graphviz==0.20.1 -greenlet==2.0.2 -identify==2.5.29 +greenlet==3.0.0 +identify==2.5.30 idna==3.4 imagesize==1.4.1 importlib-metadata==6.8.0 @@ -53,11 +51,11 @@ importlib-resources==6.1.0 iniconfig==2.0.0 ipykernel==6.25.2 ipympl==0.9.3 -ipython==8.15.0 +ipython==8.16.1 ipython-genutils==0.2.0 ipywidgets==8.1.1 isoduration==20.11.0 -jedi==0.19.0 +jedi==0.19.1 jinja2==3.1.2 json5==0.9.14 jsonpointer==2.4 @@ -65,19 +63,16 @@ jsonschema==4.19.1 jsonschema-specifications==2023.7.1 jupyter==1.0.0 jupyter-cache==0.6.1 -jupyter-client==7.4.9 +jupyter-client==8.3.1 jupyter-console==6.6.3 -jupyter-core==5.3.1 +jupyter-core==5.3.2 jupyter-events==0.7.0 jupyter-lsp==2.2.0 jupyter-server==2.7.3 -jupyter-server-fileid==0.9.0 jupyter-server-terminals==0.4.4 -jupyter-server-ydoc==0.8.0 -jupyter-ydoc==0.2.5 -jupyterlab==3.6.6 +jupyterlab==4.0.6 jupyterlab-code-formatter==2.2.1 -jupyterlab-lsp==4.3.0 +jupyterlab-lsp==5.0.0 jupyterlab-myst==2.0.2 jupyterlab-pygments==0.2.2 jupyterlab-server==2.25.0 @@ -91,30 +86,29 @@ matplotlib==3.8.0 matplotlib-inline==0.1.6 mdit-py-plugins==0.3.5 mdurl==0.1.2 -mistune==3.0.1 +mistune==3.0.2 mpl-interactions==0.23.2 mypy-extensions==1.0.0 myst-nb==0.17.2 myst-parser==0.18.1 -nbclassic==1.0.0 nbclient==0.6.8 -nbconvert==7.8.0 +nbconvert==7.9.2 nbformat==5.9.2 -nbmake==1.4.3 +nbmake==1.4.5 nest-asyncio==1.5.8 nodeenv==1.8.0 -notebook==6.5.6 +notebook==7.0.4 notebook-shim==0.2.3 numpy==1.26.0 overrides==7.4.0 -packaging==23.1 +packaging==23.2 pandocfilters==1.5.0 parso==0.8.3 pathspec==0.11.2 pexpect==4.8.0 pickleshare==0.7.5 pillow==10.0.1 -platformdirs==3.10.0 +platformdirs==3.11.0 pluggy==1.3.0 pre-commit==3.4.0 prometheus-client==0.17.1 @@ -133,19 +127,19 @@ pytest==7.4.2 python-dateutil==2.8.2 python-json-logger==2.0.7 python-lsp-jsonrpc==1.1.2 -python-lsp-server==1.8.0 +python-lsp-server==1.8.2 pytoolconfig==1.2.5 pyyaml==6.0.1 -pyzmq==24.0.1 +pyzmq==25.1.1 qtconsole==5.4.4 qtpy==2.4.0 referencing==0.30.2 requests==2.31.0 rfc3339-validator==0.1.4 rfc3986-validator==0.1.1 -rope==1.9.0 -rpds-py==0.10.3 -ruff==0.0.291 +rope==1.10.0 +rpds-py==0.10.4 +ruff==0.0.292 send2trash==1.8.2 six==1.16.0 sniffio==1.3.0 @@ -158,40 +152,40 @@ sphinx-codeautolink==0.15.0 sphinx-comments==0.0.3 sphinx-copybutton==0.5.2 sphinx-design==0.5.0 +sphinx-hep-pdgref==0.2.0 sphinx-remove-toctrees==0.0.3 sphinx-thebe==0.2.1 sphinx-togglebutton==0.3.2 sphinxcontrib-applehelp==1.0.7 sphinxcontrib-bibtex==2.6.1 sphinxcontrib-devhelp==1.0.5 -sphinxcontrib-hep-pdgref==0.1.4 sphinxcontrib-htmlhelp==2.0.4 sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.6 sphinxcontrib-serializinghtml==1.1.9 sqlalchemy==2.0.21 -stack-data==0.6.2 +stack-data==0.6.3 tabulate==0.9.0 terminado==0.17.1 tinycss2==1.2.1 tomli==2.0.1 tornado==6.3.3 tox==4.11.3 -traitlets==5.10.1 +traitlets==5.11.2 +types-python-dateutil==2.8.19.14 typing-extensions==4.8.0 ujson==5.8.0 uri-template==1.3.0 -urllib3==2.0.5 +urllib3==2.0.6 virtualenv==20.24.5 -wcwidth==0.2.6 +wcwidth==0.2.8 webcolors==1.13 webencodings==0.5.1 -websocket-client==1.6.3 +websocket-client==1.6.4 wheel==0.41.2 widgetsnbextension==4.0.9 -y-py==0.6.0 -ypy-websocket==0.8.4 zipp==3.17.0 # The following packages are considered to be unsafe in a requirements file: +# compwa-org # setuptools diff --git a/.cspell.json b/.cspell.json index b8786a53..fc4ea121 100644 --- a/.cspell.json +++ b/.cspell.json @@ -16,41 +16,24 @@ "transisions" ], "ignorePaths": [ + "**/*.bib", "**/.cspell.json", - "*.bib", - "*.ico", - "*.root", - "*.rst_t", - "*.svg", - "*particle*.*ml", + "**/Manifest.toml", + "**/Project.toml", ".constraints/*.txt", ".editorconfig", ".gitignore", ".gitpod.*", - ".mypy.ini", ".pre-commit-config.yaml", ".prettierignore", ".readthedocs.yml", ".vscode/*", - ".vscode/.gitignore", "CITATION.cff", - "codecov.yml", - "Dockerfile", "docs/_templates/*", "docs/adr/*/*", "docs/conf.py", - "labels.toml", - "Makefile", - "Manifest.toml", - "Project.toml", "pyproject.toml", - "pyrightconfig.json", - "pytest.ini", - "requirements*.txt", - "setup.cfg", - "setup.py", - "tox.ini", - "typings" + "tox.ini" ], "language": "en-US", "overrides": [ diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md deleted file mode 100644 index d0cc61cd..00000000 --- a/.github/ISSUE_TEMPLATE/bug_report.md +++ /dev/null @@ -1,32 +0,0 @@ ---- -name: Bug report -about: Create a report to help us improve -title: "" -labels: Bug -assignees: "" ---- - -## Bug description - - - - - -## How to reproduce? - -Steps to reproduce the behavior: - -1. - -## Expected behavior - - - -## System info - -Bug resulted on the following system: - -- OS: -- Version -- Python version: -- Virtual environment: diff --git a/.github/ISSUE_TEMPLATE/feature_request.md b/.github/ISSUE_TEMPLATE/feature_request.md deleted file mode 100644 index 049eb32b..00000000 --- a/.github/ISSUE_TEMPLATE/feature_request.md +++ /dev/null @@ -1,22 +0,0 @@ ---- -name: Feature request -about: Suggest an idea for this project -title: "" -labels: "✨ Enhancement" -assignees: "" ---- - -## Problem description - - - -## Proposed solution - - - - - - - diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md deleted file mode 100644 index 14b80852..00000000 --- a/.github/pull_request_template.md +++ /dev/null @@ -1,11 +0,0 @@ - - - - - diff --git a/.github/workflows/notebooks.yml b/.github/workflows/notebooks.yml index 5dd1ae93..343a83c1 100644 --- a/.github/workflows/notebooks.yml +++ b/.github/workflows/notebooks.yml @@ -13,7 +13,7 @@ jobs: name: Test all notebooks runs-on: ubuntu-20.04 steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - uses: actions/cache@v3 with: key: | diff --git a/.github/workflows/pr-linting.yml b/.github/workflows/pr-linting.yml index 6449ddd5..cd3bb74f 100644 --- a/.github/workflows/pr-linting.yml +++ b/.github/workflows/pr-linting.yml @@ -1,5 +1,3 @@ -# cspell:ignore agilepathway commitlint kode - name: PR linting on: pull_request: @@ -14,19 +12,22 @@ on: jobs: check-labels: name: Check labels - runs-on: ubuntu-20.04 + runs-on: ubuntu-22.04 steps: - - uses: docker://agilepathway/pull-request-label-checker:latest + - uses: docker://agilepathway/pull-request-label-checker:latest # cspell:ignore agilepathway with: - any_of: 🐛 Bug,✨ Feature,⚙️ Enhancement,⚠️ Interface,❗ Behavior,📝 Docs,🔨 - Maintenance,🖱️ DX + any_of: >- + 🐛 Bug,✨ Feature,⚙️ Enhancement,⚠️ Interface,❗ Behavior,📝 Docs,🔨 Maintenance,🖱️ DX none_of: Epic,💫 Good first issue repo_token: ${{ secrets.GITHUB_TOKEN }} check-title: name: Check title - runs-on: ubuntu-20.04 + runs-on: ubuntu-22.04 steps: - - uses: actions/checkout@v3 - - run: npm install @commitlint/config-conventional - - uses: JulienKode/pull-request-name-linter-action@v0.5.0 + - uses: actions/checkout@v4 + - run: npm install @compwa/commitlint-config + - name: Create commitlint config + run: | + echo "module.exports = {extends: ['@compwa/commitlint-config']}" > commitlint.config.js + - uses: JulienKode/pull-request-name-linter-action@v0.5.0 # cspell:ignore kode diff --git a/.github/workflows/release-drafter.yml b/.github/workflows/release-drafter.yml index d54187de..d64f197b 100644 --- a/.github/workflows/release-drafter.yml +++ b/.github/workflows/release-drafter.yml @@ -9,7 +9,7 @@ on: jobs: update_release_draft: - runs-on: ubuntu-20.04 + runs-on: ubuntu-22.04 steps: - uses: release-drafter/release-drafter@v5 env: diff --git a/.markdownlint.json b/.markdownlint.json deleted file mode 100644 index 23bb7fa6..00000000 --- a/.markdownlint.json +++ /dev/null @@ -1,7 +0,0 @@ -{ - "MD013": { "line_length": 88 }, - "MD026": { "punctuation": ".,;:。，；：！" }, - "MD033": { - "allowed_elements": ["br"] - } -} diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 025eeb76..878c1e0d 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -13,7 +13,7 @@ repos: - id: check-useless-excludes - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.4.0 + rev: v4.5.0 hooks: - id: check-ast - id: check-case-conflict @@ -38,24 +38,22 @@ repos: )$ - repo: https://github.com/ComPWA/repo-maintenance - rev: 0.0.197 + rev: 0.1.0 hooks: - id: check-dev-files args: + - --no-prettierrc - --pin-requirements=bimonthly - --repo-name=compwa-org - --repo-title=ComPWA Organization Documentation + - id: colab-toc-visible - id: fix-nbformat-version - - id: format-setup-cfg - id: pin-nb-requirements - id: set-nb-cells - repo: https://github.com/nbQA-dev/nbQA rev: 1.7.0 hooks: - - id: nbqa-black - additional_dependencies: - - black>=22.1.0 - id: nbqa-pyupgrade args: - --py37-plus @@ -67,6 +65,9 @@ repos: rev: 23.9.1 hooks: - id: black + - id: black-jupyter + args: [--line-length=85] + types_or: [jupyter] - repo: https://github.com/asottile/blacken-docs rev: 1.16.0 @@ -74,7 +75,7 @@ repos: - id: blacken-docs - repo: https://github.com/python-jsonschema/check-jsonschema - rev: 0.26.3 + rev: 0.27.0 hooks: - id: check-jsonschema name: Check CITATION.cff @@ -87,7 +88,7 @@ repos: pass_filenames: false - repo: https://github.com/streetsidesoftware/cspell-cli - rev: v7.3.0 + rev: v7.3.1 hooks: - id: cspell @@ -122,6 +123,7 @@ repos: cell.attachments cell.metadata.code_folding cell.metadata.id + cell.metadata.pycharm cell.metadata.user_expressions metadata.celltoolbar metadata.colab.name @@ -142,19 +144,19 @@ repos: - id: prettier - repo: https://github.com/ComPWA/mirrors-pyright - rev: v1.1.328 + rev: v1.1.330 hooks: - id: pyright - repo: https://github.com/asottile/pyupgrade - rev: v3.13.0 + rev: v3.15.0 hooks: - id: pyupgrade args: - --py37-plus - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.0.291 + rev: v0.0.292 hooks: - id: ruff args: @@ -164,3 +166,10 @@ repos: rev: v0.8.1 hooks: - id: taplo + + - repo: https://github.com/pappasam/toml-sort + rev: v0.23.1 + hooks: + - id: toml-sort + args: + - --in-place diff --git a/.prettierrc b/.prettierrc deleted file mode 100644 index ca09957f..00000000 --- a/.prettierrc +++ /dev/null @@ -1 +0,0 @@ -printWidth: 88 diff --git a/.taplo.toml b/.taplo.toml index f5caabee..16ab049a 100644 --- a/.taplo.toml +++ b/.taplo.toml @@ -1,16 +1,17 @@ exclude = [ - "**/Cargo.toml", "**/Manifest.toml", "**/Project.toml", - "labels*.toml", ] [formatting] +align_comments = false align_entries = false +allowed_blank_lines = 1 array_auto_collapse = false array_auto_expand = true array_trailing_comma = true column_width = 88 +compact_inline_tables = true indent_string = " " reorder_arrays = true reorder_keys = true diff --git a/.vscode/extensions.json b/.vscode/extensions.json index 6aeaf8fe..7a26848f 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -25,6 +25,7 @@ ], "unwantedRecommendations": [ "bungcip.better-toml", + "davidanson.vscode-markdownlint", "ms-python.flake8", "ms-python.isort", "ms-python.mypy-type-checker", diff --git a/.vscode/settings.json b/.vscode/settings.json index cea93886..ca3becef 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -1,4 +1,8 @@ { + "[git-commit]": { + "editor.rulers": [72], + "rewrap.wrappingColumn": 72 + }, "[json]": { "editor.defaultFormatter": "esbenp.prettier-vscode" }, @@ -6,14 +10,14 @@ "editor.defaultFormatter": "esbenp.prettier-vscode" }, "[markdown]": { - "editor.defaultFormatter": "esbenp.prettier-vscode", - "editor.wordWrap": "off" + "editor.defaultFormatter": "esbenp.prettier-vscode" }, "[python]": { "editor.codeActionsOnSave": { "source.organizeImports": true }, - "editor.defaultFormatter": "ms-python.black-formatter" + "editor.defaultFormatter": "ms-python.black-formatter", + "editor.rulers": [88] }, "[yaml]": { "editor.defaultFormatter": "esbenp.prettier-vscode" @@ -21,10 +25,9 @@ "black-formatter.importStrategy": "fromEnvironment", "cSpell.enabled": true, "editor.formatOnSave": true, - "editor.rulers": [88], "editor.unicodeHighlight.allowedCharacters": { - "ν": true, - "σ": true + "\u03bd": true, + "\u03c3": true }, "files.watcherExclude": { "**/*_cache/**": true, @@ -41,6 +44,7 @@ } ], "livePreview.defaultPreviewPath": "docs/_build/html", + "notebook.gotoSymbols.showAllSymbols": true, "python.analysis.autoImportCompletions": false, "python.analysis.typeCheckingMode": "strict", "python.testing.pytestEnabled": false, diff --git a/commitlint.config.js b/commitlint.config.js deleted file mode 100644 index d8b6bdcd..00000000 --- a/commitlint.config.js +++ /dev/null @@ -1,11 +0,0 @@ -module.exports = { - extends: ["@commitlint/config-conventional"], - rules: { - "type-case": [2, "always", ["upper-case"]], - "type-enum": [ - 2, - "always", - ["BEHAVIOR", "BREAK", "DOC", "DX", "ENH", "FEAT", "FIX", "MAINT"], - ], - }, -}; diff --git a/docs/_templates/genindex.html b/docs/_templates/genindex.html index abea27ff..21849ec3 100644 --- a/docs/_templates/genindex.html +++ b/docs/_templates/genindex.html @@ -7,11 +7,12 @@ {%- for ismain, link in links[1:] -%} , {% if ismain %}{% endif -%} [{{ loop.index }}] {%- if ismain %}{% - endif -%} + >{% if ismain %}{% endif -%} [{{ loop.index }}] {%- if ismain %}{% endif -%} -{%- endfor %} {%- else %} {{ firstname|e }} {%- endif %} {% endmacro %} {%- extends -"layout.html" %} {% set title = _('Index') %} {% block body %} +{%- endfor %} {%- else %} {{ firstname|e }} {%- endif %} {% endmacro %} {%- +extends "layout.html" %} {% set title = _('Index') %} {% block body %}

{{ _('Index') }}

diff --git a/docs/adr/001/operators.ipynb b/docs/adr/001/operators.ipynb index de6bbbed..22b2fc4c 100644 --- a/docs/adr/001/operators.ipynb +++ b/docs/adr/001/operators.ipynb @@ -397,6 +397,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/adr/001/sympy.ipynb b/docs/adr/001/sympy.ipynb index e3add367..60504ba1 100644 --- a/docs/adr/001/sympy.ipynb +++ b/docs/adr/001/sympy.ipynb @@ -1140,6 +1140,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/adr/002/composition.ipynb b/docs/adr/002/composition.ipynb index 6a877974..04652303 100644 --- a/docs/adr/002/composition.ipynb +++ b/docs/adr/002/composition.ipynb @@ -380,6 +380,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/adr/002/expr.ipynb b/docs/adr/002/expr.ipynb index f65e9a5e..b8477bbb 100644 --- a/docs/adr/002/expr.ipynb +++ b/docs/adr/002/expr.ipynb @@ -556,6 +556,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/adr/002/function.ipynb b/docs/adr/002/function.ipynb index 75aaacd3..16080635 100644 --- a/docs/adr/002/function.ipynb +++ b/docs/adr/002/function.ipynb @@ -223,6 +223,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "keep_output": true, "kernelspec": { "display_name": "Python 3 (ipykernel)", diff --git a/docs/conf.py b/docs/conf.py index 4f5d4a1a..195553a9 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -98,11 +98,11 @@ def fetch_logo(url: str, output_path: str) -> None: "sphinx_comments", "sphinx_copybutton", "sphinx_design", + "sphinx_hep_pdgref", "sphinx_remove_toctrees", "sphinx_thebe", "sphinx_togglebutton", "sphinxcontrib.bibtex", - "sphinxcontrib.hep.pdgref", ] exclude_patterns = [ "**.ipynb_checkpoints", @@ -194,7 +194,8 @@ def fetch_logo(url: str, output_path: str) -> None: # Intersphinx settings version_remapping = { "ipython": { - "8.12.2": "8.13.2", + "8.12.2": "8.12.1", + "8.12.3": "8.12.1", }, "ipywidgets": { "8.0.3": "8.0.5", @@ -305,6 +306,8 @@ def get_minor_version(package_name: str) -> str: "https://github.com/orgs/ComPWA/projects/6", # private "https://ieeexplore.ieee.org/document/6312940", # 401 "https://open.vscode.dev", + "https://rosettacode.org", + "https://via.placeholder.com", # irregular timeout "https://www.andiamo.co.uk/resources/iso-language-codes", # 443, but works ] diff --git a/docs/report/000.ipynb b/docs/report/000.ipynb index 69e38c1d..2bac38a0 100644 --- a/docs/report/000.ipynb +++ b/docs/report/000.ipynb @@ -926,6 +926,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "keep_output": true, "kernelspec": { "display_name": "Python 3 (ipykernel)", diff --git a/docs/report/001.ipynb b/docs/report/001.ipynb index 0c778791..2b07acf5 100644 --- a/docs/report/001.ipynb +++ b/docs/report/001.ipynb @@ -711,6 +711,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/002.ipynb b/docs/report/002.ipynb index 077e16e0..3c08000d 100644 --- a/docs/report/002.ipynb +++ b/docs/report/002.ipynb @@ -1964,6 +1964,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/003.ipynb b/docs/report/003.ipynb index 4330f266..81c4a1f0 100644 --- a/docs/report/003.ipynb +++ b/docs/report/003.ipynb @@ -1112,6 +1112,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/004.ipynb b/docs/report/004.ipynb index b9cf37f9..1e858b15 100644 --- a/docs/report/004.ipynb +++ b/docs/report/004.ipynb @@ -560,6 +560,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/005.ipynb b/docs/report/005.ipynb index 4cd5f46d..5182a9f0 100644 --- a/docs/report/005.ipynb +++ b/docs/report/005.ipynb @@ -1045,6 +1045,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/006.ipynb b/docs/report/006.ipynb index 0063c715..bc51d585 100644 --- a/docs/report/006.ipynb +++ b/docs/report/006.ipynb @@ -552,6 +552,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/007.ipynb b/docs/report/007.ipynb index ef21c10b..1504da39 100644 --- a/docs/report/007.ipynb +++ b/docs/report/007.ipynb @@ -200,6 +200,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/008.ipynb b/docs/report/008.ipynb index a33517d8..e6d49e4c 100644 --- a/docs/report/008.ipynb +++ b/docs/report/008.ipynb @@ -279,6 +279,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "keep_output": true, "kernelspec": { "display_name": "Python 3 (ipykernel)", diff --git a/docs/report/009.ipynb b/docs/report/009.ipynb index 2526cd9d..068c0184 100644 --- a/docs/report/009.ipynb +++ b/docs/report/009.ipynb @@ -1019,6 +1019,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/010.ipynb b/docs/report/010.ipynb index c2c211bd..dde486bb 100644 --- a/docs/report/010.ipynb +++ b/docs/report/010.ipynb @@ -756,6 +756,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "keep_output": true, "kernelspec": { "display_name": "Python 3 (ipykernel)", diff --git a/docs/report/011.ipynb b/docs/report/011.ipynb index c8b67b5d..8166c2fe 100644 --- a/docs/report/011.ipynb +++ b/docs/report/011.ipynb @@ -4860,6 +4860,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/012.ipynb b/docs/report/012.ipynb index c3d83605..5388e5bc 100644 --- a/docs/report/012.ipynb +++ b/docs/report/012.ipynb @@ -379,6 +379,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "keep_output": true, "kernelspec": { "display_name": "Python 3 (ipykernel)", diff --git a/docs/report/013.ipynb b/docs/report/013.ipynb index 221502bd..c8355dd6 100644 --- a/docs/report/013.ipynb +++ b/docs/report/013.ipynb @@ -648,6 +648,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/014.ipynb b/docs/report/014.ipynb index 7828a973..2aa44086 100644 --- a/docs/report/014.ipynb +++ b/docs/report/014.ipynb @@ -1728,6 +1728,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/015.ipynb b/docs/report/015.ipynb index 68114bf0..b27fe832 100644 --- a/docs/report/015.ipynb +++ b/docs/report/015.ipynb @@ -1665,6 +1665,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/016.ipynb b/docs/report/016.ipynb index 06419bfa..867cb65b 100644 --- a/docs/report/016.ipynb +++ b/docs/report/016.ipynb @@ -529,6 +529,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "keep_output": true, "kernelspec": { "display_name": "Python 3 (ipykernel)", diff --git a/docs/report/017.ipynb b/docs/report/017.ipynb index 80cae815..fc02e82b 100644 --- a/docs/report/017.ipynb +++ b/docs/report/017.ipynb @@ -742,6 +742,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/018.ipynb b/docs/report/018.ipynb index a06ffa7c..275f9a6f 100644 --- a/docs/report/018.ipynb +++ b/docs/report/018.ipynb @@ -619,6 +619,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/019.ipynb b/docs/report/019.ipynb index 7a1f3162..ae1fc7c9 100644 --- a/docs/report/019.ipynb +++ b/docs/report/019.ipynb @@ -253,6 +253,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Julia 1.9.3", "language": "julia", diff --git a/docs/report/019/Manifest.toml b/docs/report/019/Manifest.toml index 6db10b12..906f7646 100644 --- a/docs/report/019/Manifest.toml +++ b/docs/report/019/Manifest.toml @@ -11,8 +11,8 @@ uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.4.0" weakdeps = ["ChainRulesCore"] - [deps.AbstractFFTs.extensions] - AbstractFFTsChainRulesCoreExt = "ChainRulesCore" +[deps.AbstractFFTs.extensions] +AbstractFFTsChainRulesCoreExt = "ChainRulesCore" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] @@ -21,8 +21,8 @@ uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" version = "3.6.2" weakdeps = ["StaticArrays"] - [deps.Adapt.extensions] - AdaptStaticArraysExt = "StaticArrays" +[deps.Adapt.extensions] +AdaptStaticArraysExt = "StaticArrays" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" @@ -40,21 +40,21 @@ git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" version = "7.4.11" - [deps.ArrayInterface.extensions] - ArrayInterfaceBandedMatricesExt = "BandedMatrices" - ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" - ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" - ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" - ArrayInterfaceTrackerExt = "Tracker" - - [deps.ArrayInterface.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +[deps.ArrayInterface.extensions] +ArrayInterfaceBandedMatricesExt = "BandedMatrices" +ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" +ArrayInterfaceCUDAExt = "CUDA" +ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" +ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" +ArrayInterfaceTrackerExt = "Tracker" + +[deps.ArrayInterface.weakdeps] +BandedMatrices = "aae01518-5342-5314-be14-df237901396f" +BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" +CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" +GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" +StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" +Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayInterfaceCore]] deps = ["LinearAlgebra", "SnoopPrecompile", "SparseArrays", "SuiteSparse"] @@ -86,23 +86,17 @@ git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.5" -[[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" - -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "89e0654ed8c7aebad6d5ad235d6242c2d737a928" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.3" - [[deps.CatIndices]] deps = ["CustomUnitRanges", "OffsetArrays"] git-tree-sha1 = "a0f80a09780eed9b1d106a1bf62041c2efc995bc" uuid = "aafaddc9-749c-510e-ac4f-586e18779b91" version = "0.2.2" +[[deps.CEnum]] +git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.4.2" + [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra", "SparseArrays"] git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" @@ -121,6 +115,12 @@ git-tree-sha1 = "42fe66dbc8f1d09a44aa87f18d26926d06a35f84" uuid = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5" version = "0.15.3" +[[deps.Colors]] +deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] +git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" +version = "0.12.10" + [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] git-tree-sha1 = "dd3000d954d483c1aad05fe1eb9e6a715c97013e" @@ -139,17 +139,11 @@ git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" version = "0.10.0" - [deps.ColorVectorSpace.extensions] - SpecialFunctionsExt = "SpecialFunctions" +[deps.ColorVectorSpace.extensions] +SpecialFunctionsExt = "SpecialFunctions" - [deps.ColorVectorSpace.weakdeps] - SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" - -[[deps.Colors]] -deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" -uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" +[deps.ColorVectorSpace.weakdeps] +SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.Compat]] deps = ["UUIDs"] @@ -158,8 +152,8 @@ uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" version = "4.8.0" weakdeps = ["Dates", "LinearAlgebra"] - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" +[deps.Compat.extensions] +CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -183,6 +177,12 @@ git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" uuid = "adafc99b-e345-5852-983c-f28acb93d879" version = "0.3.1" +[[deps.CPUSummary]] +deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] +git-tree-sha1 = "89e0654ed8c7aebad6d5ad235d6242c2d737a928" +uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" +version = "0.2.3" + [[deps.CustomUnitRanges]] git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a" uuid = "dc8bdbbb-1ca9-579f-8c36-e416f6a65cce" @@ -210,8 +210,8 @@ uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.9" weakdeps = ["SparseArrays"] - [deps.Distances.extensions] - DistancesSparseArraysExt = "SparseArrays" +[deps.Distances.extensions] +DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] @@ -374,6 +374,12 @@ git-tree-sha1 = "783b70725ed326340adf225be4889906c96b8fd1" uuid = "2996bd0c-7a13-11e9-2da2-2f5ce47296a9" version = "0.3.7" +[[deps.Images]] +deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageBinarization", "ImageContrastAdjustment", "ImageCore", "ImageCorners", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"] +git-tree-sha1 = "d438268ed7a665f8322572be0dabda83634d5f45" +uuid = "916415d5-f1e6-5110-898d-aaa5f9f070e0" +version = "0.26.0" + [[deps.ImageSegmentation]] deps = ["Clustering", "DataStructures", "Distances", "Graphs", "ImageCore", "ImageFiltering", "ImageMorphology", "LinearAlgebra", "MetaGraphs", "RegionTrees", "SimpleWeightedGraphs", "StaticArrays", "Statistics"] git-tree-sha1 = "3ff0ca203501c3eedde3c6fa7fd76b703c336b5f" @@ -392,12 +398,6 @@ git-tree-sha1 = "7ec124670cbce8f9f0267ba703396960337e54b5" uuid = "02fcd773-0e25-5acc-982a-7f6622650795" version = "0.10.0" -[[deps.Images]] -deps = ["Base64", "FileIO", "Graphics", "ImageAxes", "ImageBase", "ImageBinarization", "ImageContrastAdjustment", "ImageCore", "ImageCorners", "ImageDistances", "ImageFiltering", "ImageIO", "ImageMagick", "ImageMetadata", "ImageMorphology", "ImageQualityIndexes", "ImageSegmentation", "ImageShow", "ImageTransformations", "IndirectArrays", "IntegralArrays", "Random", "Reexport", "SparseArrays", "StaticArrays", "Statistics", "StatsBase", "TiledIteration"] -git-tree-sha1 = "d438268ed7a665f8322572be0dabda83634d5f45" -uuid = "916415d5-f1e6-5110-898d-aaa5f9f070e0" -version = "0.26.0" - [[deps.Imath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "3d09a9f60edf77f8a4d99f9e015e8fbf9989605d" @@ -443,8 +443,8 @@ uuid = "8197267c-284f-5f27-9208-e0e47529a953" version = "0.7.5" weakdeps = ["Statistics"] - [deps.IntervalSets.extensions] - IntervalSetsStatisticsExt = "Statistics" +[deps.IntervalSets.extensions] +IntervalSetsStatisticsExt = "Statistics" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -480,12 +480,6 @@ git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" version = "2.1.91+0" -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - [[deps.LayoutPointers]] deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] git-tree-sha1 = "88b8f66b604da079a627b6fb2860d3704a6729a1" @@ -501,6 +495,17 @@ git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" uuid = "8cdb02fc-e678-4876-92c5-9defec4f444e" version = "0.3.1" +[[deps.LERC_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +uuid = "88015f11-f218-50d7-93a8-a6af411a945d" +version = "3.0.0+1" + +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.8.0+0" + [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -511,18 +516,30 @@ deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" version = "7.84.0+0" +[[deps.Libdl]] +uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" + [[deps.LibGit2]] deps = ["Base64", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.libpng_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] +git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" +version = "1.6.38+0" + +[[deps.libsixel_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] +git-tree-sha1 = "d4f63314c8aa1e48cd22aa0c17ed76cd1ae48c3c" +uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" +version = "1.10.3+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" version = "1.10.2+0" -[[deps.Libdl]] -uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" - [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"] git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713" @@ -539,15 +556,15 @@ git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" version = "0.3.24" - [deps.LogExpFunctions.extensions] - LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" - LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" - LogExpFunctionsInverseFunctionsExt = "InverseFunctions" +[deps.LogExpFunctions.extensions] +LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" +LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" +LogExpFunctionsInverseFunctionsExt = "InverseFunctions" - [deps.LogExpFunctions.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" - InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" +[deps.LogExpFunctions.weakdeps] +ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" +InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" @@ -558,20 +575,14 @@ git-tree-sha1 = "c88a4afe1703d731b1c4fdf4e3c7e77e3b176ea2" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" version = "0.12.165" - [deps.LoopVectorization.extensions] - ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] - SpecialFunctionsExt = "SpecialFunctions" - - [deps.LoopVectorization.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" +[deps.LoopVectorization.extensions] +ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] +SpecialFunctionsExt = "SpecialFunctions" -[[deps.MKL_jll]] -deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" -uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2023.1.0+0" +[deps.LoopVectorization.weakdeps] +ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" +SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -610,6 +621,12 @@ git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" version = "1.1.0" +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] +git-tree-sha1 = "154d7aaa82d24db6d8f7e4ffcfe596f40bff214b" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2023.1.0+0" + [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" @@ -645,6 +662,11 @@ version = "1.1.1" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.nghttp2_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.48.0+0" + [[deps.OffsetArrays]] deps = ["Adapt"] git-tree-sha1 = "2ac17d29c523ce1cd38e27785a7d23024853a4bb" @@ -678,11 +700,10 @@ git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.6.2" -[[deps.PNGFiles]] -deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] -git-tree-sha1 = "9b02b27ac477cad98114584ff964e3052f656a0f" -uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" -version = "0.4.0" +[[deps.p7zip_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+0" [[deps.PaddedViews]] deps = ["OffsetArrays"] @@ -707,6 +728,12 @@ git-tree-sha1 = "f6cf8e7944e50901594838951729a1861e668cb8" uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" version = "0.3.2" +[[deps.PNGFiles]] +deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] +git-tree-sha1 = "9b02b27ac477cad98114584ff964e3052f656a0f" +uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" +version = "0.4.0" + [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" @@ -719,15 +746,15 @@ git-tree-sha1 = "3aa2bb4982e575acd7583f01531f241af077b163" uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" version = "3.2.13" - [deps.Polynomials.extensions] - PolynomialsChainRulesCoreExt = "ChainRulesCore" - PolynomialsMakieCoreExt = "MakieCore" - PolynomialsMutableArithmeticsExt = "MutableArithmetics" +[deps.Polynomials.extensions] +PolynomialsChainRulesCoreExt = "ChainRulesCore" +PolynomialsMakieCoreExt = "MakieCore" +PolynomialsMutableArithmeticsExt = "MutableArithmetics" - [deps.Polynomials.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" - MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" +[deps.Polynomials.weakdeps] +ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" +MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" +MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" [[deps.PrecompileTools]] deps = ["Preferences"] @@ -763,10 +790,6 @@ git-tree-sha1 = "da095158bdc8eaccb7890f9884048555ab771019" uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0" version = "0.7.4" -[[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] -uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" - [[deps.Random]] deps = ["SHA", "Serialization"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" @@ -783,8 +806,8 @@ uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" version = "0.4.5" weakdeps = ["FixedPointNumbers"] - [deps.Ratios.extensions] - RatiosFixedPointNumbersExt = "FixedPointNumbers" +[deps.Ratios.extensions] +RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -809,6 +832,10 @@ git-tree-sha1 = "4618ed0da7a251c7f92e869ae1a19c74a7d2a7f9" uuid = "dee08c22-ab7f-5625-9660-a9af2021b33f" version = "0.3.2" +[[deps.REPL]] +deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" + [[deps.Requires]] deps = ["UUIDs"] git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" @@ -821,28 +848,22 @@ git-tree-sha1 = "54ccb4dbab4b1f69beb255a2c0ca5f65a9c82f08" uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc" version = "1.5.1" +[[deps.Serialization]] +uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" + [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" +[[deps.SharedArrays]] +deps = ["Distributed", "Mmap", "Random", "Serialization"] +uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" + [[deps.SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" version = "0.1.0" -[[deps.SLEEFPirates]] -deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "4b8586aece42bee682399c4c4aee95446aa5cd19" -uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.39" - -[[deps.Serialization]] -uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" - -[[deps.SharedArrays]] -deps = ["Distributed", "Mmap", "Random", "Serialization"] -uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" - [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" @@ -861,6 +882,12 @@ git-tree-sha1 = "2da10356e31327c7096832eb9cd86307a50b1eb6" uuid = "45858cf5-a6b0-47a3-bbea-62219f50df47" version = "0.1.3" +[[deps.SLEEFPirates]] +deps = ["IfElse", "Static", "VectorizationBase"] +git-tree-sha1 = "4b8586aece42bee682399c4c4aee95446aa5cd19" +uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" +version = "0.6.39" + [[deps.SnoopPrecompile]] deps = ["Preferences"] git-tree-sha1 = "e760a70afdcd461cf01a575947738d359234665c" @@ -899,9 +926,9 @@ uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" version = "1.4.0" weakdeps = ["OffsetArrays", "StaticArrays"] - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" +[deps.StaticArrayInterface.extensions] +StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" +StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] deps = ["LinearAlgebra", "Random", "StaticArraysCore"] @@ -910,8 +937,8 @@ uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.6.2" weakdeps = ["Statistics"] - [deps.StaticArrays.extensions] - StaticArraysStatisticsExt = "Statistics" +[deps.StaticArrays.extensions] +StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d" @@ -944,11 +971,6 @@ deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "5.10.1+6" -[[deps.TOML]] -deps = ["Dates"] -uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" -version = "1.0.3" - [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" @@ -982,23 +1004,28 @@ git-tree-sha1 = "1176cc31e867217b06928e2f140c90bd1bc88283" uuid = "06e1c1a7-607b-532d-9fad-de7d9aa2abac" version = "0.5.0" +[[deps.TOML]] +deps = ["Dates"] +uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" + [[deps.TranscodingStreams]] deps = ["Random", "Test"] git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.9.13" -[[deps.UUIDs]] -deps = ["Random", "SHA"] -uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +[[deps.Unicode]] +uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" version = "1.0.2" -[[deps.Unicode]] -uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +[[deps.UUIDs]] +deps = ["Random", "SHA"] +uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] @@ -1022,30 +1049,3 @@ deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.5+0" - -[[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" - -[[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" -uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" - -[[deps.libsixel_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] -git-tree-sha1 = "d4f63314c8aa1e48cd22aa0c17ed76cd1ae48c3c" -uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" -version = "1.10.3+0" - -[[deps.nghttp2_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" - -[[deps.p7zip_jll]] -deps = ["Artifacts", "Libdl"] -uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" diff --git a/docs/report/020.ipynb b/docs/report/020.ipynb index 16f79977..b4b83772 100644 --- a/docs/report/020.ipynb +++ b/docs/report/020.ipynb @@ -1376,6 +1376,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/021.ipynb b/docs/report/021.ipynb index c932ca3e..de0db534 100644 --- a/docs/report/021.ipynb +++ b/docs/report/021.ipynb @@ -445,8 +445,7 @@ " child1, child2 = decay_products[chain_id]\n", " for resonance in resonance_list:\n", " src += create_html_table_row(\n", - " Rf\"\\({resonance.particle.latex} \\to\"\n", - " Rf\" {child1.latex} {child2.latex}\\)\",\n", + " Rf\"\\({resonance.particle.latex} \\to {child1.latex} {child2.latex}\\)\",\n", " jp(resonance.particle),\n", " int(1e3 * resonance.particle.mass),\n", " int(1e3 * resonance.particle.width),\n", @@ -2573,6 +2572,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/022.ipynb b/docs/report/022.ipynb index 0594817c..6bcc4fed 100644 --- a/docs/report/022.ipynb +++ b/docs/report/022.ipynb @@ -742,6 +742,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/docs/report/023.ipynb b/docs/report/023.ipynb index 08f96e8c..a2050b9d 100644 --- a/docs/report/023.ipynb +++ b/docs/report/023.ipynb @@ -144,6 +144,9 @@ } ], "metadata": { + "colab": { + "toc_visible": true + }, "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", diff --git a/pyproject.toml b/pyproject.toml index 521c1af8..777db99c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,10 +1,106 @@ [build-system] +build-backend = "setuptools.build_meta" requires = [ - "setuptools>=36.2.1", # environment markers + "setuptools>=61.2", "setuptools_scm", - "wheel", ] +[project] +authors = [{name = "Common Partial Wave Analysis", email = "compwa-admin@ep1.rub.de"}] +classifiers = [ + "Development Status :: 4 - Beta", + "Intended Audience :: Developers", + "Intended Audience :: Education", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)", + "Natural Language :: English", + "Operating System :: OS Independent", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.7", + "Programming Language :: Python :: 3.8", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python", + "Topic :: Scientific/Engineering :: Physics", + "Topic :: Scientific/Engineering", +] +dependencies = [ + "graphviz", + "ipympl", + "matplotlib", + "mpl-interactions", +] +description = "Source code for the ComPWA Organization pages" +dynamic = ["version"] +license = {text = "GPLv3 or later"} +maintainers = [{email = "compwa-admin@ep1.rub.de"}] +name = "compwa-org" +requires-python = ">=3.7" + +[project.optional-dependencies] +dev = [ + "compwa-org[doc]", + "compwa-org[jupyter]", + "compwa-org[sty]", + "compwa-org[test]", + "sphinx-autobuild", + "tox >=1.9", # for skip_install, use_develop +] +doc = [ + "Sphinx >=3", + "docutils !=0.18.*, !=0.19.*", # https://github.com/executablebooks/jupyter-book/issues/2026#issuecomment-1636657741 + "myst-nb >=0.14", # nb_ configuration prefixes + "sphinx-book-theme", + "sphinx-codeautolink[ipython]", + "sphinx-comments", + "sphinx-copybutton", + "sphinx-design", + "sphinx-hep-pdgref", + "sphinx-remove-toctrees", + "sphinx-thebe", + "sphinx-togglebutton", + "sphinxcontrib-bibtex >=2", +] +format = [ + "black", +] +jupyter = [ + "compwa-org[doc]", + "jupyterlab", + "jupyterlab-code-formatter", + "jupyterlab-lsp", + "jupyterlab-myst", + "python-lsp-server[rope]", + 'ypy-websocket <0.8.3; python_version <"3.8.0"', +] +lint = [ + "ruff", +] +sty = [ + "attrs", # https://github.com/ComPWA/compwa-org/runs/8127821070?check_suite_focus=true#step:5:52 + "compwa-org[format]", + "compwa-org[lint]", + "nbformat", + "pre-commit >=1.4.0", +] +test = [ + "jupyter", + "nbmake", + 'nbmake <1.3; python_version=="3.7.*"', +] + +[project.readme] +content-type = "text/markdown" +file = "README.md" + +[project.urls] +Documentation = "https://compwa-org.rtfd.io" +Source = "https://github.com/ComPWA/compwa-org" +Tracker = "https://github.com/ComPWA/compwa-org/issues" + +[tool.setuptools] +include-package-data = false + [tool.setuptools_scm] write_to = "version.py" @@ -33,7 +129,6 @@ target-version = [ ] [tool.nbqa.addopts] -black = ["--line-length=85"] ruff = [ "--extend-ignore=A003", "--extend-ignore=B008", @@ -42,7 +137,7 @@ ruff = [ "--extend-ignore=C90", "--extend-ignore=D", "--extend-ignore=F404", - "--extend-ignore=F821", # cell magic + "--extend-ignore=F821", # cell magic "--extend-ignore=ISC003", "--extend-ignore=N802", "--extend-ignore=N803", @@ -179,3 +274,17 @@ task-tags = ["cspell"] [tool.ruff.pydocstyle] convention = "google" + +[tool.tomlsort] +all = false +ignore_case = true +in_place = true +sort_first = [ + "build-system", + "project", + "tool.setuptools", + "tool.setuptools_scm", +] +sort_table_keys = true +spaces_indent_inline_array = 4 +trailing_comma_inline_array = true diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index 198be340..00000000 --- a/setup.cfg +++ /dev/null @@ -1,84 +0,0 @@ -[metadata] -name = compwa-org -author = Common Partial Wave Analysis -author_email = compwa-admin@ep1.rub.de -maintainer_email = compwa-admin@ep1.rub.de -description = Source code for the ComPWA Organization pages -long_description = file: README.md -long_description_content_type = text/markdown -project_urls = - Tracker = https://github.com/ComPWA/compwa-org/issues - Documentation = https://compwa-org.rtfd.io - Source = https://github.com/ComPWA/compwa-org -license = GPLv3 or later -classifiers = - Development Status :: 4 - Beta - Intended Audience :: Developers - Intended Audience :: Education - Intended Audience :: Science/Research - License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) - Natural Language :: English - Operating System :: OS Independent - Programming Language :: Python - Programming Language :: Python :: 3.7 - Programming Language :: Python :: 3.8 - Programming Language :: Python :: 3.9 - Programming Language :: Python :: 3.10 - Programming Language :: Python :: 3.11 - Topic :: Scientific/Engineering - Topic :: Scientific/Engineering :: Physics - -[options] -python_requires = >=3.7 -install_requires = - graphviz - ipympl - matplotlib - mpl-interactions -setup_requires = - setuptools_scm - -[options.extras_require] -doc = - docutils !=0.18.*, !=0.19.* # https://github.com/executablebooks/jupyter-book/issues/2026#issuecomment-1636657741 - myst-nb >=0.14 # nb_ configuration prefixes - Sphinx >=3 - sphinx-book-theme - sphinx-codeautolink[ipython] - sphinx-comments - sphinx-copybutton - sphinx-design - sphinx-remove-toctrees - sphinx-thebe - sphinx-togglebutton - sphinxcontrib-bibtex >=2 - sphinxcontrib-hep-pdgref -test = - jupyter - nbmake - nbmake <1.3; python_version=="3.7.*" -format = - black -lint = - ruff -sty = - %(format)s - %(lint)s - attrs # https://github.com/ComPWA/compwa-org/runs/8127821070?check_suite_focus=true#step:5:52 - nbformat - pre-commit >=1.4.0 -jupyter = - %(doc)s - jupyterlab - jupyterlab-code-formatter - jupyterlab-lsp - jupyterlab-myst - python-lsp-server[rope] - ypy-websocket <0.8.3; python_version <"3.8.0" -dev = - %(doc)s - %(jupyter)s - %(sty)s - %(test)s - sphinx-autobuild - tox >=1.9 # for skip_install, use_develop diff --git a/setup.py b/setup.py deleted file mode 100644 index 93296978..00000000 --- a/setup.py +++ /dev/null @@ -1,6 +0,0 @@ -from setuptools import setup - -setup( - use_scm_version=True, - setup_requires=["setuptools_scm"], -)