MAINT: update pip constraints and pre-commit (#202)

* DOC: add back comma to reference style
  https://sphinxcontrib-bibtex.readthedocs.io/en/latest/usage.html\#referencing-style
* DX: activate VSCode multi-file diff editor
  https://code.visualstudio.com/updates/v1_85\#_multifile-diff-editor
* DX: define `docnblive` job in `tox.ini`
* DX: define `nb` job in `tox.ini`
* DX: outsource bibliography style to `sphinx-pybtex-etal-style`
* DX: outsource `wiki` role to `sphinx-api-relink`
* ENH: remove `importlib-metadata` from `doc` dependencies
* ENH: remove `ypy-websocket` version constraints
* MAINT: clean up `conf.py` with new Sphinx extensions
* MAINT: remove `numpy` version restriction

---------

Co-authored-by: GitHub <noreply@github.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.constraints/.gitignore

@@ -0,0 +1 @@
+!py3.*.txt

.constraints/py3.10.txt

@@ -7,7 +7,7 @@
 accessible-pygments==0.0.4
 alabaster==0.7.13
 annotated-types==0.6.0
-anyio==4.0.0
+anyio==4.1.0
 argon2-cffi==23.1.0
 argon2-cffi-bindings==21.2.0
 arrow==1.3.0
@@ -19,7 +19,9 @@ beautifulsoup4==4.12.2
 black==23.11.0
 bleach==6.1.0
 cachetools==5.3.2
-certifi==2023.7.22
+cattrs==23.2.3
+cerberus==1.3.5
+certifi==2023.11.17
 cffi==1.16.0
 cfgv==3.4.0
 chardet==5.2.0
@@ -29,145 +31,163 @@ colorama==0.4.6
 comm==0.2.0
 contourpy==1.2.0
 coverage==7.3.2
-cryptography==41.0.5
+cryptography==41.0.7
 cycler==0.12.1
 dataproperty==1.0.1
 debugpy==1.8.0
 decorator==5.1.1
 defusedxml==0.7.1
 deprecated==1.2.14
 distlib==0.3.7
+docopt==0.6.2
 docstring-to-markdown==0.13
 docutils==0.17.1
-dominate==2.8.0
-exceptiongroup==1.1.3
+dominate==2.9.0
+exceptiongroup==1.2.0
 execnet==2.0.2
 executing==2.0.1
-fastjsonschema==2.18.1
+fastjsonschema==2.19.0
 feynman==2.1.0
 filelock==3.13.1
-fonttools==4.44.0
+fonttools==4.46.0
 fqdn==1.5.1
-greenlet==3.0.1
-identify==2.5.31
-idna==3.4
+gitdb==4.0.11
+gitpython==3.1.40
+greenlet==3.0.2
+identify==2.5.33
+idna==3.6
 imagesize==1.4.1
-importlib-metadata==6.8.0
+importlib-metadata==7.0.0
 iniconfig==2.0.0
-ipykernel==6.26.0
-ipython==8.17.2
+ipykernel==6.27.1
+ipython==8.18.1
 ipywidgets==8.1.1
 isoduration==20.11.0
+isort==5.13.0
 jedi==0.19.1
 jinja2==3.1.2
 json5==0.9.14
 jsonpointer==2.4
-jsonschema==4.19.2
-jsonschema-specifications==2023.7.1
+jsonschema==4.20.0
+jsonschema-specifications==2023.11.2
 jupyter==1.0.0
-jupyter-cache==0.6.1
+jupyter-cache==1.0.0
 jupyter-client==8.6.0
 jupyter-console==6.6.3
 jupyter-core==5.5.0
 jupyter-events==0.9.0
-jupyter-lsp==2.2.0
-jupyter-server==2.10.0
+jupyter-lsp==2.2.1
+jupyter-server==2.12.1
+jupyter-server-mathjax==0.2.6
 jupyter-server-terminals==0.4.4
-jupyterlab==4.0.8
+jupyterlab==4.0.9
 jupyterlab-code-formatter==2.2.1
-jupyterlab-lsp==5.0.0
+jupyterlab-git==0.50.0
+jupyterlab-lsp==5.0.1
 jupyterlab-myst==2.1.0
-jupyterlab-pygments==0.2.2
-jupyterlab-server==2.25.1
+jupyterlab-pygments==0.3.0
+jupyterlab-server==2.25.2
 jupyterlab-widgets==3.0.9
 kiwisolver==1.4.5
 latexcodec==2.0.1
 livereload==2.6.3
+lsprotocol==2023.0.0
 markdown-it-py==2.2.0
 markupsafe==2.1.3
-matplotlib==3.8.1
+matplotlib==3.8.2
 matplotlib-inline==0.1.6
 mbstrdecoder==1.1.3
 mdit-py-plugins==0.3.5
 mdurl==0.1.2
 mistune==3.0.2
 mpmath==1.3.0
-mypy==1.6.1
+mypy==1.7.1
 mypy-extensions==1.0.0
-myst-nb==0.17.2
-myst-parser==0.18.1
-nbclient==0.7.4
-nbconvert==7.11.0
+myst-nb==1.0.0
+myst-parser==1.0.0
+nbclient==0.6.8
+nbconvert==7.12.0
+nbdime==4.0.1
 nbformat==5.9.2
+nbmake==1.4.6
 nest-asyncio==1.5.8
 nodeenv==1.8.0
 notebook==7.0.6
 notebook-shim==0.2.3
-numpy==1.23.5
+numpy==1.26.2
 overrides==7.4.0
 packaging==23.2
 pandocfilters==1.5.0
 parso==0.8.3
 pathspec==0.11.2
 pathvalidate==3.2.0
-pexpect==4.8.0
+pep517==0.13.1
+pexpect==4.9.0
 pillow==10.1.0
-platformdirs==3.11.0
+pip-api==0.0.30
+pipreqs==0.4.13
+platformdirs==4.1.0
+plette==0.4.4
 pluggy==1.3.0
 pre-commit==3.5.0
-prometheus-client==0.18.0
-prompt-toolkit==3.0.39
+prometheus-client==0.19.0
+prompt-toolkit==3.0.41
 psutil==5.9.6
 ptyprocess==0.7.0
 pure-eval==0.2.2
 pybtex==0.24.0
 pybtex-docutils==1.0.3
 pycparser==2.21
-pydantic==2.4.2
-pydantic-core==2.10.1
-pydata-sphinx-theme==0.14.3
+pydantic==2.5.2
+pydantic-core==2.14.5
+pydata-sphinx-theme==0.14.4
 pygithub==2.1.1
-pygments==2.16.1
+pygments==2.17.2
 pyjwt==2.8.0
 pynacl==1.5.0
 pyparsing==3.1.1
 pyproject-api==1.6.1
 pytablewriter==1.2.0
 pytest==7.4.3
 pytest-cov==4.1.0
-pytest-xdist==3.3.1
+pytest-xdist==3.5.0
 python-dateutil==2.8.2
-python-gitlab==4.1.1
+python-gitlab==4.2.0
 python-json-logger==2.0.7
 python-lsp-jsonrpc==1.1.2
+python-lsp-ruff==2.0.0
 python-lsp-server==1.9.0
 pytoolconfig==1.2.6
 pytz==2023.3.post1
 pyyaml==6.0.1
-pyzmq==25.1.1
-qtconsole==5.5.0
+pyzmq==25.1.2
+qtconsole==5.5.1
 qtpy==2.4.1
-referencing==0.30.2
+referencing==0.32.0
 requests==2.31.0
 requests-toolbelt==1.0.0
+requirementslib==3.0.0
 rfc3339-validator==0.1.4
 rfc3986-validator==0.1.1
 rope==1.11.0
-rpds-py==0.12.0
-ruff==0.1.4
+rpds-py==0.13.2
+ruff==0.1.7
 send2trash==1.8.2
 six==1.16.0
+smmap==5.0.1
 sniffio==1.3.0
 snowballstemmer==2.2.0
 soupsieve==2.5
 sphinx==5.3.0
+sphinx-api-relink==0.0.8
 sphinx-autobuild==2021.3.14
 sphinx-book-theme==1.0.1
 sphinx-codeautolink==0.15.0
 sphinx-comments==0.0.3
 sphinx-copybutton==0.5.2
 sphinx-design==0.5.0
 sphinx-hep-pdgref==0.2.0
+sphinx-pybtex-etal-style==0.0.2
 sphinx-thebe==0.3.0
 sphinx-togglebutton==0.3.2
 sphinxcontrib-applehelp==1.0.7
@@ -183,32 +203,35 @@ sympy==1.12
 tabledata==1.3.3
 tabulate==0.9.0
 tcolorpy==0.1.4
-terminado==0.17.1
+terminado==0.18.0
 tinycss2==1.2.1
 tomli==2.0.1
-tornado==6.3.3
-tox==4.11.3
-traitlets==5.13.0
+tomlkit==0.12.3
+tornado==6.4
+tox==4.11.4
+traitlets==5.14.0
 typepy==1.3.2
 types-docutils==0.20.0.3
 types-pkg-resources==0.1.3
 types-python-dateutil==2.8.19.14
 types-pyyaml==6.0.12.12
-types-setuptools==68.2.0.0
+types-setuptools==69.0.0.0
 typing-extensions==4.8.0
 ujson==5.8.0
 uri-template==1.3.0
-urllib3==2.0.7
-virtualenv==20.24.6
-wcwidth==0.2.9
+urllib3==2.1.0
+virtualenv==20.25.0
+wcwidth==0.2.12
 webcolors==1.13
 webencodings==0.5.1
-websocket-client==1.6.4
-wheel==0.41.3
+websocket-client==1.7.0
+wheel==0.42.0
 widgetsnbextension==4.0.9
-wrapt==1.15.0
+wrapt==1.16.0
+yarg==0.1.9
 zipp==3.17.0
 
 # The following packages are considered to be unsafe in a requirements file:
+# pip
 # pwa-pages
 # setuptools