Report revisions
End-user:
- Swedish translation
- Clarifications about the analysis used and limitations
- Complete overhaul of the look and feel of both the Typing and QC reports
- Additional elements added to both report Types (stuff like extra parameters, dates, methods and verified organisms)
- Addition of various accreditation requirements (stuff like logotypes and explicit end of line mention)
Bioinformatics:
- QC Report is now automatically colored based on thresholds in the configuration
- The subcommand resync was added to keep track of Novel ST and their process to being uploaded to pubMLST
- Reports are now given distinct versions (as opposed to implied by date), and are also generated with a distinct timestamp
- Reports are now long-term stored in an additional 'reports' folder
- microSALT now warns if fastq file exceeds 1GB
Internals:
- Outside of accredited functions, microSALT can run samples with customer sample names (as opposed to Clinical Genomics ones)
- Outside of accredited functions, microSALT can run multiple projects and generate a huge result file (called a collection)
- The entirety of the genologics configuration is now integrated into the microSALT configuration
- Various improvements to the stability of the e-mailing functionality