Release candidate microSALT 4.1.0 #195
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- Add PubMLST utils to handle authenticated API calls - Update referecer to use PubMLST utils --------- Co-authored-by: Vincent Janvid <vincent.janvid@scilifelab.se>
### Added - Release candidate microSALT v4.1.0
Revert "Release candidate v4.1.0"
### Added - Realease candidate microSALT v4.1.0
### Fixed - Merged in intended changes
fix: Add pubmlst utils
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Description
Trying to fix the state of master. Reset master to 4.0.0, added all changes here.
Primary function of PR
Testing
If the update is a hotfix, it is sufficient to rely on the development testing along with the Travis self-test automatically applied to the PR.
Test routine to verify the stability of the PR:
bash /home/proj/production/servers/resources/hasta.scilifelab.se/install-microsalt-stage.sh BRANCHNAMEusconda activate S_microSALTexport MICROSALT_CONFIG=/home/proj/dropbox/microSALT.jsonmicroSALT analyse project MIC3109microSALT analyse project MIC4107microSALT analyse project MIC4109microSALT analyse project ACC5551Verify that the results for projects MIC3109, MIC4107, MIC4109 & ACC5551 are consistent with the results attached to AMSystem doc 1490, Microbial_WGS.xlsx
Test results
These are the results of the tests, and necessary conclusions, that prove the stability of the PR.
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