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Add GitHub Actions CI workflow
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samuell committed Jun 28, 2024
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46 changes: 46 additions & 0 deletions .github/workflows/python-package-conda.yml
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name: Python Package using Conda

on: [push]

jobs:
build-linux:
runs-on: ubuntu-20.04
strategy:
max-parallel: 5

steps:
- uses: actions/checkout@v4
- name: Set up Python 3.6
uses: actions/setup-python@v3
with:
python-version: '3.6.15'
- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
run: |
export LANG=en_US.iso885915
conda info
echo $LANG
conda env update --file environment.yml --name base
- name: Install microSALT
run: |
mkdir ~/.microSALT && cp configExample.json ~/.microSALT/config.json
GITHUB_BRANCH=${GITHUB_REF##*/}
branch=$GITHUB_BRANCH; yes | bash <(cat install.sh) $branch
conda activate microSALT
- name: Lint with flake8
run: |
conda install flake8
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
conda install pytest
pytest --cov=microSALT tests/
- name: Run Coveralls
run: |
coveralls

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