Fix #149: Make regex more specific to not match other genes with same…

… prefix
Clinical-Genomics · Jul 11, 2024 · c9ee900 · c9ee900
1 parent fc763fe
commit c9ee900
Showing 1 changed file with 2 additions and 4 deletions.
diff --git a/microSALT/utils/scraper.py b/microSALT/utils/scraper.py
@@ -257,11 +257,9 @@ def scrape_blast(self, type="", file_list=[]):
                                         ].capitalize()
                                     #Ignores reference name and finds relevant resFinder entry
 
-                                    #FIXME: Needs to match again a _ so as not to be too promiscuous (See #149)
-                                    padder = [x for x in locilengths.keys() if x.startswith('>{}'.format(partials[1]))]
+                                    padder = [x for x in locilengths.keys() if x.startswith('>{}_'.format(partials[1]))]
                                     if len(padder) == 0:
-                                        #FIXME: Needs to match again a _ so as not to be too promiscuous (See #149)
-                                        padder = [x for x in locilengths.keys() if x.startswith('>{}'.format(partials[1][:-1]))]
+                                        padder = [x for x in locilengths.keys() if x.startswith('>{}_'.format(partials[1][:-1]))]
                                     try:
                                         padder = padder[0]
                                     except IndexError as e: