Fix #149: Avoid promiscuous matching of gene name

This needs to be follow up with additional checks The same change might need to be done for other matching as well.
Clinical-Genomics · Jul 5, 2024 · 264cb2a · 264cb2a
1 parent 3163a85
commit 264cb2a
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/microSALT/utils/scraper.py b/microSALT/utils/scraper.py
@@ -257,9 +257,9 @@ def scrape_blast(self, type="", file_list=[]):
                                         ].capitalize()
                                     #Ignores reference name and finds relevant resFinder entry
 
-                                    padder = [x for x in locilengths.keys() if x.startswith('>{}'.format(partials[1]))]
+                                    padder = [x for x in locilengths.keys() if x.startswith('>{}_'.format(partials[1]))]
                                     if len(padder) == 0:
-                                        padder = [x for x in locilengths.keys() if x.startswith('>{}'.format(partials[1][:-1]))]
+                                        padder = [x for x in locilengths.keys() if x.startswith('>{}_'.format(partials[1][:-1]))]
                                     try:
                                         padder = padder[0]
                                     except IndexError as e: