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frequency and count tag for the variant clusters #74

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J35P312 opened this issue Nov 15, 2019 · 0 comments
Open

frequency and count tag for the variant clusters #74

J35P312 opened this issue Nov 15, 2019 · 0 comments

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@J35P312
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J35P312 commented Nov 15, 2019

Hello there!
We need frequency and count data for each exported variant cluster.
These numbers need ot be stored in the INFO field as two separate keys, such as

AF=0.4 (frequency)
AC=1234 (count)

Next run SVDB like this

svdb --query --query_vcf input.vcf --db exported_loqus_vcf.vcf --input_hits AC --input_frq AF

Good luck!

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