Release v36.2.1

Add index to sample id on sequencing metrics (#2135)(patch)

Added

• Index on sample_internal_id column on the SampleLaneSequencingMetrics table.

Release v36.1.0

Transfer flow cell data to housekeeper (#2119)(minor)

Added

• Transfer of flow cell data to housekeeper in the new demultiplex finish flowcell command

Release v36.0.4

feat(pytest): Unfrezze (#2127)

Changed

• Remove version limitation on pytest

Release v36.0.3

feat(docutils): Remove (#2125)

Changed

• Remove docutils from requirements-dev.txt

Release v36.0.2

feat(snapshottest): Remove (#2124)

Changed

• Remove snapshottest

Release v36.0.1

Create flow cell in new demultiplex finish (#2115)(patch)

Added

• Parsing and creation of flow cell in the new cg demultiplex finish command

Fixed

• Rename FlowCell model to FlowCellDirectoryData

Release v35.0.2

Refactor demultiplex and sample sheet constants (#2112)(patch)

Added

• class SampleSheetNovaSeqXSections (unused for the moment) in cg/constants/demultiplexing.py with all the constants needed for constructing the sample sheet content.

Changed

• moved all the sample sheet NovaSeq6000 related constants to the class SampleSheetNovaSeq6000Sections in cg/constants/demultiplexing.py.
• updated usages of old constants for the new ones
• Separate the sample sheet content construction in two functions: get_additional_sections_sample_sheet which deals with all sections that are not data related, and get_data_section_header_and_columns which creates the header and the column names of the data section. These function will differ drastically when the distinction between NovaSeq6000 and NovaSeqX is implemented.

Fixed

• Reorganised cg/constants/demultiplexing.py putting classes and constants in alphabetical order

Release v35.0.1

Outline implementation of new demultiplex finish functionality (#2111)(patch)

Added

• Outline for porting functionality to the new cg demultixplex finish command

Release v34.0.0

feat(vogue): Removed all but db_entry and model (#2104) (major)

Changed

• Removed all but db_entry and model for Vogue

Release v33.3.4

Refactor case filters (#2103)

Changed

• Sorted imports, keys and function definition
• Standardize filter function names