NAMESPACE

# Generated by roxygen2: do not edit by hand

export(BuildNicheExpressionAssay)
export(CellTypeNicheEnrichment)
export(CompareClusters)
export(ComputeAutocorrelation)
export(ComputeCoexpression)
export(ComputeRMetric)
export(ComputeSpatiallyVariableFeatures)
export(ConvertAnndata)
export(EvaluatePerformancePerCell)
export(EvaluatePerformancePerGene)
export(FindNiches)
export(MergeDatasets)
export(MultiometoSpatialObject)
export(PlotCellTypeEnrichmentBarPlot)
export(PlotCorrelation)
export(PlotCorrelationSpatial)
export(PlotGeneCorrelation)
export(PlotMoransiAcrossModality)
export(PlotNNDistance)
export(PlotNicheEnrichmentBarPlot)
export(PlotNicheEnrichmentHeatmap)
export(PlotSpatialAssignment)
export(PlotSpatialRankAcrossModality)
export(PlotSpatialVariableRanks)
export(PlotSummedExpressionSpatial)
export(RunProjection)
export(VisualiseCoexpression)
export(VisualiseCoexpressionWindow)
export(VisualiseFeatures)
export(VisualisePairedModality)
export(VisualisePairedModalityOneCounterpart)
export(VisualiseSingleModality)
import(Matrix, except = c(head, tail))
import(Seurat)
import(SeuratObject)
import(dbscan)
import(dplyr)
import(ggplot2)
import(ggpubr)
import(ggrepel)
import(matrixStats, except = count)

import(reshape2)
import(sf)
import(sfdep)
import(spdep)
import(tibble)
import(utils)
import(viridis)
importFrom(grDevices,cairo_pdf)
importFrom(grDevices,dev.off)
importFrom(harmony,RunHarmony)
importFrom(magrittr,"%>%")
importFrom(pheatmap,pheatmap)
importFrom(stats,cor)
importFrom(stats,fisher.test)
importFrom(stats,lm)
importFrom(stats,p.adjust)
importFrom(tidyr,separate)