Error

[dlogan]

Batch 132 is throwing an error, but the output files are filling up ok (/imaging/analysis/2010_05_18_Malaria_Liver_Infection_Bhatia_Lab/Analysis/2015_12_08_Thailand_Nil_v2/txt_output).

<type 'exceptions.AttributeError'>  Python 2.7.2: /imaging/analysis/CPCluster/CellProfiler-2.0/builds/redhat_6/bin/python
Wed Dec 9 00:29:08 2015
A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /imaging/docs/People/imageweb/batchprofiler/BatchProfiler/ViewBatch.py in ()
    747         
    748 with bputilities.CellProfilerContext():
    749     doc = ViewBatchDoc()
=>  750     doc.build()
    751 doc.render()
doc = <bpformdata.ViewBatchDoc object>, doc.build = <bound method ViewBatchDoc.build of <bpformdata.ViewBatchDoc object>>
 /imaging/docs/People/imageweb/batchprofiler/BatchProfiler/ViewBatch.py in build(self=<bpformdata.ViewBatchDoc object>)
     67             self.build_submit_run()
     68         else:
=>   69             self.build_batch()
     70     
     71     def read_batch(self):
self = <bpformdata.ViewBatchDoc object>, self.build_batch = <bound method ViewBatchDoc.build_batch of <bpformdata.ViewBatchDoc object>>
 /imaging/docs/People/imageweb/batchprofiler/BatchProfiler/ViewBatch.py in build_batch(self=<bpformdata.ViewBatchDoc object>)
    208                 self.build_summary_table()
    209                 self.build_summary_buttons()
=>  210                 self.build_database_scripts()
    211             with self.tag("div", style='clear:both; padding-top:10px'):
    212                 self.build_job_table()
self = <bpformdata.ViewBatchDoc object>, self.build_database_scripts = <bound method ViewBatchDoc.build_database_scripts of <bpformdata.ViewBatchDoc object>>
 /imaging/docs/People/imageweb/batchprofiler/BatchProfiler/ViewBatch.py in build_database_scripts(self=<bpformdata.ViewBatchDoc object>)
    384                     run, task, task_status = sql_jobs.sql_file_job_and_status(
    385                         self.my_batch.batch_id, 
=>  386                         RunBatch.batch_script_file(filename))
    387                     status = None if task_status is None else task_status.status
    388                     with self.tag("tr"):
global RunBatch = <module 'RunBatch' from '/imaging/docs/People/imageweb/batchprofiler/BatchProfiler/RunBatch.py'>, RunBatch.batch_script_file = <function batch_script_file>, filename = 'SQL__Per_Well_SETUP.SQL'
 /imaging/docs/People/imageweb/batchprofiler/BatchProfiler/sql_jobs.py in sql_file_job_and_status(batch_id=132, sql_file='batch_SQL__Per_Well_SETUP.SQL')
     54     returns latest job or None if not submitted
     55     """
=>   56     batch = RunBatch.select(batch_id)
     57     run = RunBatch.BPSQLRun.select_by_sql_filename(batch, sql_file)
     58     if run is None:
batch undefined, global RunBatch = <module 'RunBatch' from '/imaging/docs/People/imageweb/batchprofiler/BatchProfiler/RunBatch.py'>, RunBatch.select undefined, batch_id = 132
<type 'exceptions.AttributeError'>: 'module' object has no attribute 'select' 
      args = ("'module' object has no attribute 'select'",) 
      message = "'module' object has no attribute 'select'"