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Add MANE cross-references #48

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ChrisMoth opened this issue Mar 13, 2024 · 1 comment
Open

Add MANE cross-references #48

ChrisMoth opened this issue Mar 13, 2024 · 1 comment

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@ChrisMoth
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MANE cross-references link the human genome to transcript databases in a new and convincing manner
https://www.ncbi.nlm.nih.gov/refseq/MANE/

For the pipeline, the MANE cross-references are mined from the text format uniprot_sprot.dat.gz, or its human-only subset as created by
DOWNLOAD_uniprot.bash (see pipeline_download_scripts repository at github)

As the VUStruct pipeline evolves, we expect to increasingly integrate these cross-references as preferred
over the uniprot assigned cross-references

ChrisMoth added a commit that referenced this issue Mar 13, 2024
@ChrisMoth
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I have downloaded the isoform.io v1.3 models to /dors/capra_lab/data/isoform.io Also there is a cross-reference .csv file.

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