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Replace Bio:pairwise2 with Pairwise Aligner in PDBMapAlignment.py #47

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ChrisMoth opened this issue Jun 27, 2023 · 0 comments

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ChrisMoth commented Jun 27, 2023

pairwise2 is deprecated.

Docs don't look too bad - but note that the subst matrix architecture of Biopython has been changing as well.

https://biopython.org/docs/1.76/api/Bio.Align.html?highlight=pairwisealigner#Bio.Align.PairwiseAligner

ChrisMoth added a commit that referenced this issue


          pairwise2 not used - so get rid of it #47

bdf017b

ChrisMoth added a commit that referenced this issue


          AlphaMissense query functions #47

922ed2b

ChrisMoth added a commit that referenced this issue


          Install newer Biopython alignment code on new branch #47

036973b

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