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Cross reference uniprot IDs to ALL Sifts-aligned PDBs, not just PDB IDs from idmapping #46

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ChrisMoth opened this issue Feb 13, 2023 · 0 comments
Open

Cross reference uniprot IDs to ALL Sifts-aligned PDBs, not just PDB IDs from idmapping #46

ChrisMoth opened this issue Feb 13, 2023 · 0 comments

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@ChrisMoth
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The Uniprot Idmapping file (and TABLE) cross-references uniprot IDs to PDB IDs which are aligned.

However, the SIFTS Rest API lists double the cross-referenced human proteins and we should include all of these as considered in our pipeline.
ChrisMoth added a commit that referenced this issue Feb 13, 2023
@ChrisMoth
Grab PDB IDs ALSO from sifts restapi. No longer rely just on idmappin…
5545e1f 
…g for PDB IDs #46
ChrisMoth added a commit that referenced this issue Apr 7, 2023
@ChrisMoth
Integrate all the PDB IDs referenced by SIFTS as well as those refere…
8870e45 
…nced in the idmapping file #46
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