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Gnomad Variants: Identify and reject transcripts which don't map to Chrom1-22/X/Y/MT #32

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ChrisMoth opened this issue Nov 22, 2021 · 0 comments
Open

Gnomad Variants: Identify and reject transcripts which don't map to Chrom1-22/X/Y/MT #32

ChrisMoth opened this issue Nov 22, 2021 · 0 comments

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@ChrisMoth
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ChrisMoth commented Nov 22, 2021 •
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When the transcript_to_genomic.pl PERL script receives chrCHR.... chromosome postions, instead of chr1-chr22,chrX/chrY/chrMT, then we need to exit away, without crashing, by "simply" returning "0 missense variants found"
@ChrisMoth ChrisMoth changed the title Gnomad Variants: Identify and reject transcripts which don't map to Chrom1-23/X/Y Gnomad Variants: Identify and reject transcripts which don't map to Chrom1-22/X/Y/MT Nov 22, 2021
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