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Document pdbmap.py --load_vcf; comment .slurm scripts #25

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ChrisMoth opened this issue Jul 14, 2021 · 0 comments
Open

Document pdbmap.py --load_vcf; comment .slurm scripts #25

ChrisMoth opened this issue Jul 14, 2021 · 0 comments

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@ChrisMoth
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The pdbmap library architecture has evolved away from storing 3d-structural chains/residues/etc, and the main-line pdbmap.py is now used for loads of .vcf data into SQL.

pdbmap.py, and the surrounding ecosystem of .slurm scripts were overdue for python3 re-formatting, deeper commenting.
ChrisMoth added a commit that referenced this issue Jul 14, 2021
@ChrisMoth
Improve commenting of schema creation #25
86bc926
ChrisMoth added a commit that referenced this issue Jul 14, 2021
@ChrisMoth
Reformat code for PEP 8 compliance: #25
c718f81
ChrisMoth added a commit that referenced this issue Jul 14, 2021
@ChrisMoth
Update clinvar SQL load slurm file to load per chromosome #25
06a445c
ChrisMoth added a commit that referenced this issue Jul 14, 2021
@ChrisMoth
Script now looks for config file in new place, loads v94 of COSMIC #25
148386e
ChrisMoth added a commit that referenced this issue Jul 14, 2021
@ChrisMoth
Reformat to PEP 8, improve errors messages #25
433b619
ChrisMoth added a commit that referenced this issue Jul 14, 2021
@ChrisMoth
Reformat to PEP 8, improve errors messages. Drop dead code at end of …
36db556 
…file #25
ChrisMoth added a commit that referenced this issue Feb 20, 2022
@ChrisMoth
Allow uniparc_parser to skip until an ID is reached #25
76f1cf5
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@ChrisMoth