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20 Open 16 Closed
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Issues list

Load Uniparc sequences from RestAPI
#50 opened Jul 10, 2024 by ChrisMoth
Add Alphamissense scores to SQL database
#49 opened Apr 25, 2024 by ChrisMoth
Add MANE cross-references
#48 opened Mar 13, 2024 by ChrisMoth
1
Replace Bio:pairwise2 with Pairwise Aligner in PDBMapAlignment.py
#47 opened Jun 27, 2023 by ChrisMoth
Cross reference uniprot IDs to ALL Sifts-aligned PDBs, not just PDB IDs from idmapping
#46 opened Feb 13, 2023 by ChrisMoth
Replace sys.exit() across all modules
#44 opened Oct 3, 2022 by ChrisMoth
VEP echo function broken
#43 opened Sep 24, 2022 by ChrisMoth
With PFAM server going away, create domain graphics locally
#42 opened Sep 14, 2022 by ChrisMoth
Streamline Uniprot IdMapping handling to cope with versioned ENST0000*.N transcript IDs
#41 opened Aug 25, 2022 by ChrisMoth
Move pathprox "complex" code to PDBMapComplex.py Sort out bugs in complex processing
#40 opened Jul 18, 2022 by ChrisMoth
Integrate new Gnomad Mitochondrial data
#39 opened Jul 15, 2022 by ChrisMoth
SIFTS and PDB related database must have case insensitive chain designations
#38 opened Jul 11, 2022 by ChrisMoth
VEP command line should not have hard coded version 100
#34 opened May 17, 2022 by ChrisMoth
Convert PyVCF lib to Python3, and integrate into PDBMap.
#33 opened Dec 8, 2021 by ChrisMoth
Gnomad Variants: Identify and reject transcripts which don't map to Chrom1-22/X/Y/MT
#32 opened Nov 22, 2021 by ChrisMoth
Style Code to match PEP 8
#31 opened Nov 22, 2021 by ChrisMoth
Document pdbmap.py --load_vcf; comment .slurm scripts
#25 opened Jul 14, 2021 by ChrisMoth
Add access to gene ID numbers from uniprot idmapping
#22 opened Mar 5, 2021 by ChrisMoth
Create biounits from mmCIF files, in biopython.
#16 opened May 12, 2020 by ChrisMoth
Create tests to validate pdbmap installation, enviornment, and basic return values.
#12 opened Oct 28, 2019 by ChrisMoth
ProTip! no:milestone will show everything without a milestone.