pairwise2 not used - so get rid of it #47

CapraLab · Jun 28, 2023 · bdf017b · bdf017b
1 parent 8870e45
commit bdf017b
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Showing 2 changed files with 1 addition and 4 deletions.
diff --git a/lib/PDBMapData.py b/lib/PDBMapData.py
@@ -18,8 +18,7 @@
 import sys,os,csv,re,gzip
 import numpy as np
 import subprocess as sp
-from Bio import pairwise2
-from Bio.SubsMat import MatrixInfo as matlist
+# from Bio.SubsMat import MatrixInfo as matlist
 import vcf # PyVCF
 from lib import bed # PyVCF emulator for BED files
 

diff --git a/lib/PDBMapSIFTSdb.py b/lib/PDBMapSIFTSdb.py
@@ -13,8 +13,6 @@
 import sys,os,csv
 from collections import OrderedDict
 import logging
-from Bio import pairwise2
-# unused and deprecated: from Bio.SubsMat import MatrixInfo as matlist
 from Bio.PDB import Structure
 from Bio.SeqUtils import seq1
 from lib import PDBMapSQLdb