Pipeline for RNA-seq and SNP analysis from S. mutans
This pipeline was developed to determine the presence of Single Nucleotie Variants from RNA-seq. The data used is Public acces Bioproject: PRJNA301970 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA301970).
Objective: The objetive is to determine the variants of nucleotides and aminoacid mutations. This would determine the changes due the substrate used in the experiment done by Zeng L et al.(2016)
Reference: Zeng L et al., "Sucrose- and Fructose-Specific Effects on the Transcriptome of Streptococcus mutans, as Determined by RNA Sequencing.", Appl Environ Microbiol, 2016 Jan 1;82(1):146-56