v0.14

What's Changed

The major update of this release is the addition of new encoding options to TagPileup including full fragment which mimics other standard bioinformatic tools & 3 prime ends for datasets from assays such as PRO-seq (#70). To support this more complicated encoding structure, a new live-update cartoon was added to the TagPileup GUI too show where markings are being encoded on a sequenced read (#71).

Some other TagPileup related issues were addressed in this release including an update to the insert size calculation (#76) and the addition of a TagExtend option (#73).

New Tools:

• Heatmap Labeler (#54)
• Three Color Heatmap (#48)
• GUI for Composite plot tool & bugfix to CLI (#96,#97)
• Shift Coordinate (#92)

Other updates:

• Gzip support added for several tools (#88,#91)
• Two color heatmap now supports transparent trace heatmaps (#66)
• Add seed option to Randomize FASTA (#45)
• Alert users to odd-sized TP sliding window requirement (#79)
• Support for newer hg38 human genome build (#80)
• Converter between chromosome numeral systems for yeast genome builds (#49)
• Bugfix: PE-Stats bulk GUI only processing single file (#83)
• Bugfix: Two Color Heatmap Gzip incompatibility (#85)
• Bugfix: TagPileup off by 1bp error (#11,#75)
• Add Singularity definition file
• Update JFree dependencies (#82)
• Deprecate JTV file format (#64)
• New documentation website(Docusaurus) with homepage designed (@ashhh97,#89,#90)

Full Changelog: v0.13...v0.14