-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathcdsaxs.simulations.html
789 lines (716 loc) · 67.7 KB
/
cdsaxs.simulations.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
<!DOCTYPE html>
<html class="writer-html5" lang="en">
<head>
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>cdsaxs.simulations package — cdsaxs v0.0.1 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/css/theme.css" />
<script src="_static/jquery.js"></script>
<script src="_static/_sphinx_javascript_frameworks_compat.js"></script>
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
<script src="_static/doctools.js"></script>
<script src="_static/sphinx_highlight.js"></script>
<script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
<script src="_static/js/theme.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Setting Up a Development Environment" href="for_developpers.html" />
<link rel="prev" title="API reference" href="modules.html" />
</head>
<body class="wy-body-for-nav">
<div class="wy-grid-for-nav">
<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-nav-search" >
<a href="index.html" class="icon icon-home">
cdsaxs
</a>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
<input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
<p class="caption" role="heading"><span class="caption-text">User Guide:</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="introduction.html">Overview</a></li>
<li class="toctree-l1"><a class="reference internal" href="introduction.html#installation">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="introduction.html#background">Background</a></li>
<li class="toctree-l1"><a class="reference internal" href="tutorials.html">Tutorials</a></li>
<li class="toctree-l1"><a class="reference internal" href="modules.html">API reference</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">For Developers:</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="for_developpers.html">Setting Up a Development Environment</a></li>
<li class="toctree-l1"><a class="reference internal" href="for_developpers.html#project-structure">Project Structure</a></li>
<li class="toctree-l1"><a class="reference internal" href="for_developpers.html#creating-a-new-simulation-model">Creating a New Simulation Model</a></li>
<li class="toctree-l1"><a class="reference internal" href="for_developpers.html#testing">Testing</a></li>
<li class="toctree-l1"><a class="reference internal" href="for_developpers.html#modifying-and-building-the-documentation">Modifying and building the documentation</a></li>
</ul>
</div>
</div>
</nav>
<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="index.html">cdsaxs</a>
</nav>
<div class="wy-nav-content">
<div class="rst-content">
<div role="navigation" aria-label="Page navigation">
<ul class="wy-breadcrumbs">
<li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
<li class="breadcrumb-item"><a href="modules.html">API reference</a></li>
<li class="breadcrumb-item active">cdsaxs.simulations package</li>
<li class="wy-breadcrumbs-aside">
<a href="_sources/cdsaxs.simulations.rst.txt" rel="nofollow"> View page source</a>
</li>
</ul>
<hr/>
</div>
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
<div itemprop="articleBody">
<section id="cdsaxs-simulations-package">
<h1>cdsaxs.simulations package<a class="headerlink" href="#cdsaxs-simulations-package" title="Permalink to this heading"></a></h1>
<section id="submodules">
<h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this heading"></a></h2>
</section>
<section id="module-cdsaxs.simulations.base">
<span id="cdsaxs-simulations-base-module"></span><h2>cdsaxs.simulations.base module<a class="headerlink" href="#module-cdsaxs.simulations.base" title="Permalink to this heading"></a></h2>
<p>This is a protocol that defines the methods that should be implemented to ensure that the Simulation class
is compatible with the fitter class.</p>
<dl class="py class">
<dt class="sig sig-object py" id="cdsaxs.simulations.base.Geometry">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cdsaxs.simulations.base.</span></span><span class="sig-name descname"><span class="pre">Geometry</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/base.html#Geometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.base.Geometry" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">Protocol</span></code></p>
<p>This is a protocol that defines the methods that should be implemented by the Geometry class.</p>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.base.Geometry.convert_to_dataframe">
<span class="sig-name descname"><span class="pre">convert_to_dataframe</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fitparams</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/base.html#Geometry.convert_to_dataframe"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.base.Geometry.convert_to_dataframe" title="Permalink to this definition"></a></dt>
<dd><p>This is a obligatory method that should be implemented by the Geometry class.
It’s job is to take the arrays of fitparams and convert them into a pandas DataFrame
based on the initial guess given by the user.</p>
<p>Parameters:
fitparams (list): an array returned by the fitter that contains the population to be evaluated.</p>
<p>returns:
df (pandas.DataFrame): a DataFrame containing the fitparams in a readable format.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.base.Geometry.rescale_fitparams">
<span class="sig-name descname"><span class="pre">rescale_fitparams</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fitparams</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/base.html#Geometry.rescale_fitparams"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.base.Geometry.rescale_fitparams" title="Permalink to this definition"></a></dt>
<dd><p>This is a obligatory method that should be implemented by the Geometry class.
The values incoming from the fitter are normalized in the range of -sigma to sigma they need to be rescaled.
so this method’s job is to take the arrays of fitparams and rescale them based on the initial guess given by the user.
the formula used should be something like this:
rescaled_fitparams = fitparams * multiplier + initial_guess
multiplier and initial_guess are the values given by the user. if you find that a certain set of multiplier works
better you can hardcode them as well but it is not recommended as it will make the code less flexible.</p>
<p>Parameters:
fitparams (list): an array returned by the fitter that contains the population to be evaluated.</p>
<p>returns:
df (dataframe): an array containing the rescaled fitparams.</p>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt class="sig sig-object py" id="cdsaxs.simulations.base.Simulation">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cdsaxs.simulations.base.</span></span><span class="sig-name descname"><span class="pre">Simulation</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/base.html#Simulation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.base.Simulation" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">Protocol</span></code></p>
<p>This is a protocol that defines the methods that should be implemented by the Simulation class.</p>
<dl class="py property">
<dt class="sig sig-object py" id="cdsaxs.simulations.base.Simulation.geometry">
<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">geometry</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><a class="reference internal" href="#cdsaxs.simulations.base.Geometry" title="cdsaxs.simulations.base.Geometry"><span class="pre">Geometry</span></a></em><a class="headerlink" href="#cdsaxs.simulations.base.Simulation.geometry" title="Permalink to this definition"></a></dt>
<dd></dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.base.Simulation.set_from_fitter">
<span class="sig-name descname"><span class="pre">set_from_fitter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">from_fitter</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/base.html#Simulation.set_from_fitter"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.base.Simulation.set_from_fitter" title="Permalink to this definition"></a></dt>
<dd><p>This is a obligatory method that should be implemented by the Simulation class.
It should tell the Simulation object that the incoming data is from a fitter object and it should also initialize necessary things
like saving the initial guess given by user to a dataframe.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.base.Simulation.simulate_diffraction">
<span class="sig-name descname"><span class="pre">simulate_diffraction</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fitparams</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">best_fit</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/base.html#Simulation.simulate_diffraction"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.base.Simulation.simulate_diffraction" title="Permalink to this definition"></a></dt>
<dd><p>This is a obligatory method that should be implemented by the Simulation class. It is used by Residual class.</p>
<dl class="field-list simple">
<dt class="field-odd">Raises<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>NotImplementedError</strong> – _description_</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
</section>
<section id="module-cdsaxs.simulations.stacked_trapezoid">
<span id="cdsaxs-simulations-stacked-trapezoid-module"></span><h2>cdsaxs.simulations.stacked_trapezoid module<a class="headerlink" href="#module-cdsaxs.simulations.stacked_trapezoid" title="Permalink to this heading"></a></h2>
<p>This module simulates the diffraction pattern of a stacked trapezoids model.</p>
<p>It is built upon the protocol defined in base.py.</p>
<dl class="simple">
<dt>Classes:</dt><dd><p>StackedTrapezoidSimulation: A class representing a simulation of stacked trapezoids for diffraction pattern calculation.
StackedTrapezoidGeometry: A class representing the geometry of stacked trapezoids for simulations.
StackedTrapezoidDiffraction: A class for simulating diffraction from stacked trapezoids.</p>
</dd>
</dl>
<dl class="py class">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cdsaxs.simulations.stacked_trapezoid.</span></span><span class="sig-name descname"><span class="pre">StackedTrapezoidDiffraction</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">TrapezoidGeometry</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xp=<module</span> <span class="pre">'numpy'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/numpy/__init__.py'></span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidDiffraction"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
<p>Class for simulating diffraction from stacked trapezoids.</p>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.calculate_coefficients">
<span class="sig-name descname"><span class="pre">calculate_coefficients</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">qzs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">df</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidDiffraction.calculate_coefficients"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.calculate_coefficients" title="Permalink to this definition"></a></dt>
<dd><p>Calculate the coefficients needed to simulate intensities, taking into account the material through the weight parameter.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>qzs</strong> – array-like
List of qz values.</p></li>
<li><p><strong>df</strong> – DataFrame containing the parameters for the trapezoids.</p></li>
</ul>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p><dl class="simple">
<dt>array-like</dt><dd><p>Coefficients needed to calculate the form factor.</p>
</dd>
</dl>
</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>coefficients</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.calculate_form_factor">
<span class="sig-name descname"><span class="pre">calculate_form_factor</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">qys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qzs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidDiffraction.calculate_form_factor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.calculate_form_factor" title="Permalink to this definition"></a></dt>
<dd><p>Calculate the form factor of the stacked trapezoid at all qx, qz positions.</p>
<p>Arguments:
qys, qzs: array_like</p>
<blockquote>
<div><p>List of qx/qz at which the form factor is simulated.</p>
</div></blockquote>
<p>df: DataFrame containing the parameters for the trapezoids.</p>
<p>Returns:
form_factor: array_like</p>
<blockquote>
<div><p>Values of the form factor.</p>
</div></blockquote>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.correct_form_factor_intensity">
<span class="sig-name descname"><span class="pre">correct_form_factor_intensity</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">qys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qzs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fitparams</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidDiffraction.correct_form_factor_intensity"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.correct_form_factor_intensity" title="Permalink to this definition"></a></dt>
<dd><p>Calculate the intensites using form factor and apply debye waller corrections</p>
<p>Arguments:
qys, qzs: array_like</p>
<blockquote>
<div><p>List of qx/qz at which the form factor is simulated.</p>
</div></blockquote>
<dl class="simple">
<dt>fitparams: array_like, optional</dt><dd><p>parameters returned by fitter.</p>
</dd>
<dt>fit_mode: str, optional</dt><dd><p>Method used for fitting. Default is ‘cmaes’.</p>
</dd>
<dt>best_fit: array_like, optional</dt><dd><p>Best fit obtained from fitter.</p>
</dd>
</dl>
<p>Returns:
corrected_intensity: array_like</p>
<blockquote>
<div><p>Corrected form factor intensity.</p>
</div></blockquote>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.corrections_dwi0bk">
<span class="sig-name descname"><span class="pre">corrections_dwi0bk</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">intensities</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qzs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidDiffraction.corrections_dwi0bk"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.corrections_dwi0bk" title="Permalink to this definition"></a></dt>
<dd><p>Apply corrections to the form factor intensities.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>df</strong> – DataFrame containing the parameters for the trapezoids.</p></li>
<li><p><strong>qxs</strong> – array-like
List of qx/qz at which the form factor is simulated.</p></li>
<li><p><strong>qzs</strong> – array-like
List of qx/qz at which the form factor is simulated.</p></li>
</ul>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p><dl class="simple">
<dt>array-like</dt><dd><p>Corrected form factor intensities.</p>
</dd>
</dl>
</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>intensities_corr</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.trapezoid_form_factor">
<span class="sig-name descname"><span class="pre">trapezoid_form_factor</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">qys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qzs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y2</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidDiffraction.trapezoid_form_factor"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction.trapezoid_form_factor" title="Permalink to this definition"></a></dt>
<dd><p>Simulation of the form factor of a trapezoid at all qx, qz positions.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>qys</strong> – array-like
List of qy/qz at which the form factor is simulated.</p></li>
<li><p><strong>qzs</strong> – array-like
List of qy/qz at which the form factor is simulated.</p></li>
<li><p><strong>y1</strong> – array-like
Values of the bottom right and left position of the trapezoids.</p></li>
<li><p><strong>y2</strong> – array-like
Values of the bottom right and left position of the trapezoids.</p></li>
<li><p><strong>df</strong> – DataFrame containing the parameters for the trapezoids.</p></li>
</ul>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p><dl class="simple">
<dt>array-like</dt><dd><p>Values of the form factor.</p>
</dd>
</dl>
</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>form_factor</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cdsaxs.simulations.stacked_trapezoid.</span></span><span class="sig-name descname"><span class="pre">StackedTrapezoidGeometry</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xp=<module</span> <span class="pre">'numpy'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/numpy/__init__.py'></span></span></em>, <em class="sig-param"><span class="n"><span class="pre">from_fitter=False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">initial_guess=None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#cdsaxs.simulations.base.Geometry" title="cdsaxs.simulations.base.Geometry"><code class="xref py py-class docutils literal notranslate"><span class="pre">Geometry</span></code></a></p>
<p>A class representing the geometry of stacked trapezoids for simulations.</p>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.xp">
<span class="sig-name descname"><span class="pre">xp</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.xp" title="Permalink to this definition"></a></dt>
<dd><p>The numpy-like module to use for array operations.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p>module</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.from_fitter">
<span class="sig-name descname"><span class="pre">from_fitter</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.from_fitter" title="Permalink to this definition"></a></dt>
<dd><p>Flag indicating whether the geometry is created from a fitter.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p>bool</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.initial_guess">
<span class="sig-name descname"><span class="pre">initial_guess</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.initial_guess" title="Permalink to this definition"></a></dt>
<dd><p>Dictionary containing the initial guess values for the geometry.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p>dict</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.initial_guess_dataframe">
<span class="sig-name descname"><span class="pre">initial_guess_dataframe</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.initial_guess_dataframe" title="Permalink to this definition"></a></dt>
<dd><p>DataFrame containing the initial guess values for the geometry.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p>DataFrame</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.symmetric">
<span class="sig-name descname"><span class="pre">symmetric</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.symmetric" title="Permalink to this definition"></a></dt>
<dd><p>Flag indicating whether the trapezoids are symmetric.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p>bool</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.calculate_ycoords">
<span class="sig-name descname"><span class="pre">calculate_ycoords</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">height</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">langle</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">rangle</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">y2</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.calculate_ycoords"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.calculate_ycoords" title="Permalink to this definition"></a></dt>
<dd><p>Calculate y1 and y2 coordinates for each trapezoid.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.calculate_shift">
<span class="sig-name descname"><span class="pre">calculate_shift</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">height</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">langle</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.calculate_shift"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.calculate_shift" title="Permalink to this definition"></a></dt>
<dd><p>Calculate how much the trapezoids are shifted in the z direction.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.convert_to_dataframe">
<span class="sig-name descname"><span class="pre">convert_to_dataframe</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fitparams</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.convert_to_dataframe"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.convert_to_dataframe" title="Permalink to this definition"></a></dt>
<dd><p>Convert the fitparams to a DataFrame based on the initial guess DataFrame.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.rescale_fitparams">
<span class="sig-name descname"><span class="pre">rescale_fitparams</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fitparams_df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.rescale_fitparams"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.rescale_fitparams" title="Permalink to this definition"></a></dt>
<dd><p>Rescale the Gaussian distributed values obtained from the fitter to the actual values.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.check_physical_validity">
<span class="sig-name descname"><span class="pre">check_physical_validity</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">rescaled_fitparams_df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.check_physical_validity"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.check_physical_validity" title="Permalink to this definition"></a></dt>
<dd><p>Check if the values obtained from the fitter make physical sense.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="id0">
<span class="sig-name descname"><span class="pre">calculate_shift</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.calculate_shift"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id0" title="Permalink to this definition"></a></dt>
<dd><p>Calculate how much the trapezoids are shifted in the z direction.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>df</strong> (<em>pd.dataframe</em>) – DataFrame containing the parameters for the trapezoids.</p>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>Array of calculated shift values.</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>shift (ndarray)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="id1">
<span class="sig-name descname"><span class="pre">calculate_ycoords</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.calculate_ycoords"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id1" title="Permalink to this definition"></a></dt>
<dd><p>Calculate y1 and y2 coordinates for each trapezoid.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>df</strong> (<em>pd.dataframe</em>) – DataFrame containing the parameters for the trapezoids.</p>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>Tuple of 2D arrays of y1 and y2 values.</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>(y1 (ndarray), y2 (ndarray))</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="id2">
<span class="sig-name descname"><span class="pre">check_physical_validity</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">rescaled_fitparams_df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.check_physical_validity"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id2" title="Permalink to this definition"></a></dt>
<dd><p>Check if the values obtained from the fitter make physical sense.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>rescaled_fitparams_df</strong> (<em>pd.dataframe</em>) – DataFrame containing the rescaled values of the fitparams.</p>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>DataFrame containing the rescaled values of the fitparams with the values that do not make physical sense replaced by np.nan.</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>rescaled_df (pd.dataframe)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="id3">
<span class="sig-name descname"><span class="pre">convert_to_dataframe</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fitparams</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.convert_to_dataframe"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id3" title="Permalink to this definition"></a></dt>
<dd><p>Convert the fitparams to a DataFrame based on the initial guess dataframe.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>fitparams</strong> (<em>dictionary</em>) – Array-like containing the Arguments for the trapezoids.</p>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>DataFrame containing the Arguments for the trapezoids.</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>pd_fitparams (dictionary)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="id4">
<span class="sig-name descname"><span class="pre">rescale_fitparams</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">fitparams_df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.rescale_fitparams"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id4" title="Permalink to this definition"></a></dt>
<dd><p>Rescale the Gaussian distributed values obtained from the fitter to the actual values and check if the values make physical sense.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>fitparams_df</strong> (<em>pd.dataframe</em>) – DataFrame containing the parameters for the trapezoids.</p>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>DataFrame containing the rescaled values of the fitparams.</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>rescaled_fitparams_df (pd.dataframe)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.set_initial_guess_dataframe">
<span class="sig-name descname"><span class="pre">set_initial_guess_dataframe</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">best_fit_cmaes_df</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidGeometry.set_initial_guess_dataframe"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry.set_initial_guess_dataframe" title="Permalink to this definition"></a></dt>
<dd><p>Set the initial guess values in a dataframe and put them in the attribute initial_guess_dataframe.
If the fitter is MCMC, replace the initial guess values with the best estimate obtained from CMAES.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>best_fit_cmaes_df</strong> (<em>DataFrame</em><em>, </em><em>optional</em>) – The best fit Arguments obtained from the CMAES to be used by MCMC.</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cdsaxs.simulations.stacked_trapezoid.</span></span><span class="sig-name descname"><span class="pre">StackedTrapezoidSimulation</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">qys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qzs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">from_fitter</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_gpu</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">initial_guess</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidSimulation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#cdsaxs.simulations.base.Simulation" title="cdsaxs.simulations.base.Simulation"><code class="xref py py-class docutils literal notranslate"><span class="pre">Simulation</span></code></a></p>
<p>A class representing a simulation of stacked trapezoids for diffraction pattern calculation.</p>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.qys">
<span class="sig-name descname"><span class="pre">qys</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.qys" title="Permalink to this definition"></a></dt>
<dd><p>The q-values in the y-direction for diffraction calculation.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p>array-like</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.qzs">
<span class="sig-name descname"><span class="pre">qzs</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.qzs" title="Permalink to this definition"></a></dt>
<dd><p>The q-values in the z-direction for diffraction calculation.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p>array-like</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.xp">
<span class="sig-name descname"><span class="pre">xp</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.xp" title="Permalink to this definition"></a></dt>
<dd><p>The module used for numerical computations (numpy or cupy).</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p>module</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.from_fitter">
<span class="sig-name descname"><span class="pre">from_fitter</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.from_fitter" title="Permalink to this definition"></a></dt>
<dd><p>Indicates if the simulation is called from the fitter.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p>bool</p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.TrapezoidGeometry">
<span class="sig-name descname"><span class="pre">TrapezoidGeometry</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.TrapezoidGeometry" title="Permalink to this definition"></a></dt>
<dd><p>The geometry object for the stacked trapezoids.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p><a class="reference internal" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry" title="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry">StackedTrapezoidGeometry</a></p>
</dd>
</dl>
</dd></dl>
<dl class="py attribute">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.TrapezoidDiffraction">
<span class="sig-name descname"><span class="pre">TrapezoidDiffraction</span></span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.TrapezoidDiffraction" title="Permalink to this definition"></a></dt>
<dd><p>The diffraction object for the stacked trapezoids.</p>
<dl class="field-list simple">
<dt class="field-odd">Type<span class="colon">:</span></dt>
<dd class="field-odd"><p><a class="reference internal" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction" title="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction">StackedTrapezoidDiffraction</a></p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.__init__">
<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">self</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qzs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">from_fitter</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_gpu</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">initial_guess</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidSimulation.__init__"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.__init__" title="Permalink to this definition"></a></dt>
<dd><p>Initializes the StackedTrapezoidSimulation object.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.simulate_diffraction">
<span class="sig-name descname"><span class="pre">simulate_diffraction</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">self</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fitparams</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fit_mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'cmaes'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">best_fit</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidSimulation.simulate_diffraction"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.simulate_diffraction" title="Permalink to this definition"></a></dt>
<dd><p>Simulates the diffraction pattern of the stacked trapezoids.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.set_from_fitter">
<span class="sig-name descname"><span class="pre">set_from_fitter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">self</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">from_fitter</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">best_fit_cmaes_df</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidSimulation.set_from_fitter"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.set_from_fitter" title="Permalink to this definition"></a></dt>
<dd><p>Sets the from_fitter attribute and updates the geometry object accordingly.</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.geometry">
<span class="sig-name descname"><span class="pre">geometry</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">self</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation.geometry" title="Permalink to this definition"></a></dt>
<dd><p>Returns the geometry object for the stacked trapezoids.</p>
</dd></dl>
<dl class="py property">
<dt class="sig sig-object py" id="id5">
<em class="property"><span class="pre">property</span><span class="w"> </span></em><span class="sig-name descname"><span class="pre">geometry</span></span><a class="headerlink" href="#id5" title="Permalink to this definition"></a></dt>
<dd><p>Returns the geometry object for the stacked trapezoids.</p>
<dl class="field-list simple">
<dt class="field-odd">Returns<span class="colon">:</span></dt>
<dd class="field-odd"><p>The geometry object for the stacked trapezoids.</p>
</dd>
<dt class="field-even">Return type<span class="colon">:</span></dt>
<dd class="field-even"><p>TrapezoidGeometry (<a class="reference internal" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry" title="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry">StackedTrapezoidGeometry</a>)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="id6">
<span class="sig-name descname"><span class="pre">set_from_fitter</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">from_fitter</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">best_fit_cmaes_df</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidSimulation.set_from_fitter"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id6" title="Permalink to this definition"></a></dt>
<dd><p>Sets the from_fitter attribute and updates the geometry object accordingly.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>from_fitter</strong> (<em>bool</em>) – Indicates if the simulation is called from the fitter.</p></li>
<li><p><strong>best_fit_cmaes_df</strong> (<em>pd.dataframe</em>) – The best fit Arguments obtained from the CMAES.</p></li>
</ul>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="id7">
<span class="sig-name descname"><span class="pre">simulate_diffraction</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">params</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fit_mode</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'cmaes'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/stacked_trapezoid.html#StackedTrapezoidSimulation.simulate_diffraction"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#id7" title="Permalink to this definition"></a></dt>
<dd><p>Simulates the diffraction pattern of the stacked trapezoids.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>fitparams</strong> (<em>list</em><em>, </em><em>optional</em>) – A list of floats coming from the fitter. Defaults to None.</p></li>
<li><p><strong>best_fit</strong> (<em>array-like</em><em>, </em><em>optional</em>) – The best fit Arguments obtained from the fitter. Defaults to None.</p></li>
</ul>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>A 2D array of floats containing the corrected intensity.</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>corrected_intensity (array-like)</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
</section>
<section id="module-cdsaxs.simulations.strong_castle">
<span id="cdsaxs-simulations-strong-castle-module"></span><h2>cdsaxs.simulations.strong_castle module<a class="headerlink" href="#module-cdsaxs.simulations.strong_castle" title="Permalink to this heading"></a></h2>
<p>This module is a child class of the StackedTrapezoidSimulation class. Its purpose is to implement the
Strong Castle model which calculates the overlay.</p>
<dl class="simple">
<dt>Classes:</dt><dd><p>StrongCastleSimulation: This class is a child class of the StackedTrapezoidSimulation class.
StrongCastleGeometry: This class is a child class of the StackedTrapezoidGeometry class.
StrongCastleDiffraction: This class is a child class of the StackedTrapezoidDiffraction class.</p>
</dd>
</dl>
<dl class="py class">
<dt class="sig sig-object py" id="cdsaxs.simulations.strong_castle.StrongCastleDiffraction">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cdsaxs.simulations.strong_castle.</span></span><span class="sig-name descname"><span class="pre">StrongCastleDiffraction</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">TrapezoidGeometry</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">xp=<module</span> <span class="pre">'numpy'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/numpy/__init__.py'></span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/strong_castle.html#StrongCastleDiffraction"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.strong_castle.StrongCastleDiffraction" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction" title="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidDiffraction"><code class="xref py py-class docutils literal notranslate"><span class="pre">StackedTrapezoidDiffraction</span></code></a></p>
<p>This class is a child class of the StackedTrapezoidDiffraction class. It modifies the correct_form_factor_intensity method to account for the two
fixed params n1 and n2 which are the number of trapezoids in the first and second layer of trapezoids respectively.</p>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.strong_castle.StrongCastleDiffraction.correct_form_factor_intensity">
<span class="sig-name descname"><span class="pre">correct_form_factor_intensity</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">qys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qzs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fitparams</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/strong_castle.html#StrongCastleDiffraction.correct_form_factor_intensity"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.strong_castle.StrongCastleDiffraction.correct_form_factor_intensity" title="Permalink to this definition"></a></dt>
<dd><p>remove the fixed parameters n1 and n2 from the fitparams dictionary and call the parent class correct_form_factor_intensity method.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>qys</strong> (<em>np.ndarray</em>) – points in the y direction where form factor is calculated</p></li>
<li><p><strong>qzs</strong> (<em>np.ndarray</em>) – points in the z direction where form factor is calculated</p></li>
<li><p><strong>fitparams</strong> (<em>np.ndarray</em>) – a dictionary containing the parameters</p></li>
</ul>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>intensity of the strong castle model</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>corrected_intensity (np.ndarray)</p>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt class="sig sig-object py" id="cdsaxs.simulations.strong_castle.StrongCastleGeometry">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cdsaxs.simulations.strong_castle.</span></span><span class="sig-name descname"><span class="pre">StrongCastleGeometry</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">xp=<module</span> <span class="pre">'numpy'</span> <span class="pre">from</span> <span class="pre">'/opt/hostedtoolcache/Python/3.11.11/x64/lib/python3.11/site-packages/numpy/__init__.py'></span></span></em>, <em class="sig-param"><span class="n"><span class="pre">from_fitter=False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">initial_guess=None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/strong_castle.html#StrongCastleGeometry"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.strong_castle.StrongCastleGeometry" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry" title="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidGeometry"><code class="xref py py-class docutils literal notranslate"><span class="pre">StackedTrapezoidGeometry</span></code></a></p>
<p>This class is a child class of the StackedTrapezoidGeometry class. Several methods are modified and added to implement the Strong Castle model(notably the most important
calculate_ycoords).</p>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.strong_castle.StrongCastleGeometry.calculate_ycoords">
<span class="sig-name descname"><span class="pre">calculate_ycoords</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">df</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/strong_castle.html#StrongCastleGeometry.calculate_ycoords"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.strong_castle.StrongCastleGeometry.calculate_ycoords" title="Permalink to this definition"></a></dt>
<dd><p>This is the modified version of the calculate_ycoords method in the parent class. The two trapezoids are separated into two groups and the y coordinates are calculated
and the y coordinates of the second trapezoid are shifted by the overlay value.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>df</strong> (<em>pandas.DataFrame</em>) – dataframe containing the trapezoid parameters</p>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>y1 coordinates of the trapezoids
y2 (numpy.ndarray): y2 coordinates of the trapezoids</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>y1 (numpy.ndarray)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.strong_castle.StrongCastleGeometry.check_initial_guess">
<span class="sig-name descname"><span class="pre">check_initial_guess</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">params</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/strong_castle.html#StrongCastleGeometry.check_initial_guess"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.strong_castle.StrongCastleGeometry.check_initial_guess" title="Permalink to this definition"></a></dt>
<dd><p>Check if the number of trapezoids n1+n2 is equal to the number of angles in the initial_guess dictionary</p>
<p>Args:
initial_guess (dict): dictionary containing the initial guess for the parameters</p>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.strong_castle.StrongCastleGeometry.remove_fixed_params">
<span class="sig-name descname"><span class="pre">remove_fixed_params</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">initial_guess</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/strong_castle.html#StrongCastleGeometry.remove_fixed_params"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.strong_castle.StrongCastleGeometry.remove_fixed_params" title="Permalink to this definition"></a></dt>
<dd><p>Remove the fixed parameters which are the number of first and second layer of trapezoids n1 and n2 from the initial_guess dictionary so that they are not fitted.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><p><strong>initial_guess</strong> (<em>dictionary</em>) – A dictionary containing the initial guess for the parameters provided by the user.</p>
</dd>
<dt class="field-even">Returns<span class="colon">:</span></dt>
<dd class="field-even"><p>A dictionary containing the initial guess for the parameters without the fixed parameters.</p>
</dd>
<dt class="field-odd">Return type<span class="colon">:</span></dt>
<dd class="field-odd"><p>initial_guess (dictionary)</p>
</dd>
</dl>
</dd></dl>
<dl class="py method">
<dt class="sig sig-object py" id="cdsaxs.simulations.strong_castle.StrongCastleGeometry.set_n1_n2">
<span class="sig-name descname"><span class="pre">set_n1_n2</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">n1</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n2</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/strong_castle.html#StrongCastleGeometry.set_n1_n2"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.strong_castle.StrongCastleGeometry.set_n1_n2" title="Permalink to this definition"></a></dt>
<dd><p>Set self.n1 and self.n2 to the provided values.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>n1</strong> (<em>integer</em>) – number of trapezoids in first layer of trapezoids</p></li>
<li><p><strong>n2</strong> (<em>integer</em>) – number of trapezoids in second layer of trapezoids</p></li>
</ul>
</dd>
</dl>
</dd></dl>
</dd></dl>
<dl class="py class">
<dt class="sig sig-object py" id="cdsaxs.simulations.strong_castle.StrongCastleSimulation">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">cdsaxs.simulations.strong_castle.</span></span><span class="sig-name descname"><span class="pre">StrongCastleSimulation</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">qys</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qzs</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">from_fitter</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">use_gpu</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">initial_guess</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/cdsaxs/simulations/strong_castle.html#StrongCastleSimulation"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#cdsaxs.simulations.strong_castle.StrongCastleSimulation" title="Permalink to this definition"></a></dt>
<dd><p>Bases: <a class="reference internal" href="#cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation" title="cdsaxs.simulations.stacked_trapezoid.StackedTrapezoidSimulation"><code class="xref py py-class docutils literal notranslate"><span class="pre">StackedTrapezoidSimulation</span></code></a></p>
<p>This class is a child class of the StackedTrapezoidSimulation class.</p>
</dd></dl>
</section>
<section id="module-cdsaxs.simulations">
<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-cdsaxs.simulations" title="Permalink to this heading"></a></h2>
</section>
</section>
</div>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
<a href="modules.html" class="btn btn-neutral float-left" title="API reference" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="for_developpers.html" class="btn btn-neutral float-right" title="Setting Up a Development Environment" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>
<hr/>
<div role="contentinfo">
<p>© Copyright 2024, Nischal Dhungana.</p>
</div>
Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
<a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
</footer>
</div>
</div>
</section>
</div>
<script>
jQuery(function () {
SphinxRtdTheme.Navigation.enable(true);
});
</script>
</body>
</html>