Template update: from poetry to conda+pip

Signed-off-by: Nicola VIGANO <nicola.vigano@cea.fr>

.github/ISSUE_TEMPLATE/bug_report.md

@@ -1,32 +1,62 @@
 ---
 name: Bug report
-about: Create a report to help us improve
-title: ''
+about: Create a bug report to help us improve.
+title: "bug: "
 labels: unconfirmed
 assignees: ''
 
 ---
 
-**Describe the bug**
-A clear and concise description of what the bug is.
+### Description of the bug
+<!-- Please provide a clear and concise description of what the bug is. -->
 
-**To Reproduce**
-Steps to reproduce the behavior:
-1. Go to '...'
-2. Run command '...'
-3. Scroll down to '...'
-4. See error
+### To Reproduce
+<!-- Please provide a Minimal Reproducible Example (MRE) if possible.
+     Try to boil down the problem to a few lines of code.
+     Your code should run by simply copying and pasting it.
 
-**Expected behavior**
-A clear and concise description of what you expected to happen.
+     Example:
 
-**Screenshots**
-If applicable, add screenshots to help explain your problem.
+     ```
+     git clone https://github.com/username/repro
+     cd repro
+     python -m venv .venv
+     . .venv/bin/activate
+     pip install -r requirements.txt
+     ...  # command or code showing the issue
+     ```
+-->
 
-**System (please complete the following information):**
-- `Auto-Denoise` version: [e.g. 0.2.1]
-- Python version: [e.g. 3.10]
-- OS: [Windows/Linux]
+```
+WRITE MRE / INSTRUCTIONS HERE
+```
 
-**Additional context**
-Add any other context about the problem here.
+### Full traceback
+<!-- Please provide the full error message / traceback if any, by pasting it in the code block below.
+     No screenshots! -->
+
+<details><summary>Full traceback</summary>
+
+```python
+PASTE TRACEBACK HERE
+```
+
+</details>
+
+### Expected behavior
+<!-- Please provide a clear and concise description of what you expected to happen. -->
+
+### Environment information
+<!-- Please run the following command in your repository and paste its output below it,
+     redacting sensitive information. -->
+
+```bash
+autoden --debug-info  # | xclip -selection clipboard
+```
+
+PASTE OUTPUT HERE
+
+### Additional context
+<!-- Add any other relevant context about the problem here,
+     like links to other issues or pull requests, screenshots, etc.
+-->

.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1,5 @@
+blank_issues_enabled: false
+contact_links:
+- name: I have a question / I need help
+  url: https://github.com/CEA-MetroCarac/auto-denoise/discussions/new?category=q-a
+  about: Ask and answer questions in the Discussions tab.

.github/ISSUE_TEMPLATE/feature_request.md

@@ -1,20 +1,20 @@
 ---
 name: Feature request
-about: Suggest an idea for this project
-title: ''
+about: Suggest an idea for this project.
+title: "feature: "
 labels: feature
 assignees: ''
 
 ---
 
-**Is your feature request related to a problem? Please describe.**
-A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
+### Is your feature request related to a problem? Please describe.
+<!-- A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]. -->
 
-**Describe the solution you'd like**
-A clear and concise description of what you want to happen.
+### Describe the solution you'd like
+<!-- A clear and concise description of what you want to happen. -->
 
-**Describe alternatives you've considered**
-A clear and concise description of any alternative solutions or features you've considered.
+### Describe alternatives you've considered
+<!-- A clear and concise description of any alternative solutions or features you've considered. -->
 
-**Additional context**
-Add any other context or screenshots about the feature request here.
+### Additional context
+<!-- Add any other context or screenshots about the feature request here. -->

.github/workflows/ci.yml

@@ -1,4 +1,4 @@
-name: ci
+name: Python package
 
 on:
   push:
@@ -16,14 +16,7 @@ env:
   LANG: en_US.utf-8
   LC_ALL: en_US.utf-8
   PYTHONIOENCODING: UTF-8
-
-  # To fix an error when running Poetry on Windows
-  # (https://github.com/python-poetry/poetry/issues/2629),
-  # we set Poetry's cache directory to .poetry_cache in the current directory.
-  # It makes it easier to later remove the virtualenv when it's broken.
-  # Absolute path is necessary to avoid this issue:
-  # https://github.com/python-poetry/poetry/issues/3049
-  POETRY_CACHE_DIR: ${{ github.workspace }}/.poetry_cache
+  PYTHON_VERSIONS: ""
 
 jobs:
 
@@ -35,42 +28,41 @@ jobs:
     - name: Checkout
       uses: actions/checkout@v4
 
+    - name: Fetch all tags
+      run: git fetch --depth=1 --tags
+
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: "3.10"
 
-    - name: Set up Poetry
-      run: pip install poetry
-
-    - name: Set up the cache
-      uses: actions/cache@v3
-      with:
-        path: .poetry_cache
-        key: quality-poetry-cache
-
-    - name: Set up the project
-      run: poetry install -vv
-
-    - name: Check if the documentation builds correctly
-      run: poetry run duty check-docs
-
-    - name: Check the code quality
-      run: poetry run duty check-code-quality
+    - name: Python info
+      shell: bash -e {0}
+      run: |
+        which python
+        python --version
 
-    - name: Check if the code is correctly typed
-      run: poetry run duty check-types
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip setuptools build
+        python -m pip install flake8 pytest
+        python -m pip install .
 
-    - name: Check for vulnerabilities in dependencies
+    - name: Lint with flake8
       run: |
-        pip install safety
-        poetry run duty check-dependencies
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 src/autoden tests examples --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 src/autoden tests examples --count --exit-zero --max-complexity=15 --max-line-length=127 --statistics
 
   tests:
 
     strategy:
       matrix:
-        os: [ ubuntu-latest, macos-latest, windows-latest ]
+        os:
+        - ubuntu-latest
+        # - windows-latest
+        # - macos-latest
         python-version: [ "3.10", "3.11", "3.12" ]
 
     runs-on: ${{ matrix.os }}
@@ -80,21 +72,21 @@ jobs:
       uses: actions/checkout@v4
 
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
+        allow-prereleases: true
 
-    - name: Set up Poetry
-      run: pip install poetry
-
-    - name: Set up the cache
-      uses: actions/cache@v3
-      with:
-        path: .poetry_cache
-        key: tests-poetry-cache-${{ matrix.os }}-py${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip setuptools build
+        python -m pip install flake8 pytest
+        python -m pip install .
 
-    - name: Set up the project
-      run: poetry install -vv || { rm -rf .poetry_cache/virtualenvs/*; poetry install -vv; }
+    - name: Test with pytest
+      run: |
+        pytest tests/
 
-    - name: Run the test suite
-      run: poetry run duty test
+    - name: Verify that we can build the package
+      run: |
+        python -m build

.gitignore

@@ -140,6 +140,7 @@ venv.bak/
 
 # mypy
 .mypy_cache/
+.ruff_cache/
 .dmypy.json
 dmypy.json