From ca1f1f046ce94c1730560ebd779bef00d7357bc2 Mon Sep 17 00:00:00 2001 From: hugoval <76450221+yudgugger@users.noreply.github.com> Date: Wed, 26 Jun 2024 18:26:13 +0200 Subject: [PATCH 1/5] Update README.md --- doc/README.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/doc/README.md b/doc/README.md index 965ce81b..4bec3815 100644 --- a/doc/README.md +++ b/doc/README.md @@ -11,7 +11,7 @@

In the case you use this library for your work, please think about citing it:
• H. Valloire, P. Quéméré, N. Vaxelaire, H. Kuentz, G. Le Rhun, Ł. Borowik, "Enhancing ferroelectric characterization at nanoscale: A comprehensive approach for data processing in spectroscopic piezoresponse force microscopy", J. Appl. Phys, 21 May 2024, 135 (19): 194101, DOI: https://doi.org/10.1063/5.0197226
-• Hugo Valloire, Patrick Quemere, 2024, May 22, PySSPFM (Version 2024.06). +• Hugo Valloire, Patrick Quemere, 2024, May 22, PySSPFM (Version 2024.07).

@@ -352,6 +352,7 @@ The
  • examples/utils/nanoloop/ex_phase.py.
  • examples/toolbox/ex_vector_clustering.py.
    • +
  • examples/toolbox/ex_clustering_inertia.py.
  • examples/toolbox/ex_global_map_reader.py.
  • examples/toolbox/ex_list_map_reader.py.
  • examples/toolbox/ex_map_correlation.py.
    • From fcb2a72da12a1bd938ae80b0b3768f906707e7d0 Mon Sep 17 00:00:00 2001 From: hugoval <76450221+yudgugger@users.noreply.github.com> Date: Wed, 26 Jun 2024 18:37:58 +0200 Subject: [PATCH 2/5] Update README.md --- doc/README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/doc/README.md b/doc/README.md index 4bec3815..9854c91a 100644 --- a/doc/README.md +++ b/doc/README.md @@ -535,7 +535,7 @@ Following the second stage of processing (see section -For each script in the toolbox, it is possible to save the analysis conducted. Using function save_path_management of the script PySSPFM/utils/path_for_runable.py, a toolbox folder is then created within the processing directory. This folder comprises a set of subdirectories, one for each toolbox treatment, following the nomenclature: 'tool_used'_'yyyy-mm-dd-HHh-MMm'. Each of these directories contains the figures generated during the analysis performed by the respective tool, along with a text file user_params.txt generated by the function save_user_pars of the script PySSPFM/utils/path_for_runable.py that maintains a record of the parameters employed for the analysis. +For each script in the toolbox, it is possible to save the analysis conducted. Using function save_path_management of the script PySSPFM/utils/path_for_runable.py, a toolbox folder is then created within the processing directory. This folder comprises a set of subdirectories, one for each toolbox treatment, following the nomenclature: 'tool_used'_'yyyy-mm-dd-HHh-MMm'. Each of these directories contains the figures generated during the analysis performed by the respective tool, along with a text file user_params.txt generated by the function save_user_pars of the script PySSPFM/utils/path_for_runable.py that maintains a record of the parameters employed for the analysis. Each of these directories now includes the figures generated during the analysis performed by the respective tool. Additionally, measurement parameters are contained in the csv measurement sheet that is copied into the result folder, and processing parameters are stored in a JSON file named datacube_to_nanoloop_s1_params.json, created with create_json_res or copy_json_res function of the script PySSPFM/utils/path_for_runable.py.

    @@ -2170,7 +2170,7 @@ The entire assemblage of scripts under the • [1] Jesse, Stephen, Arthur P. Baddorf, and Sergei V. Kalinin. “Switching Spectroscopy Piezoresponse Force Microscopy of Ferroelectric Materials.” Applied Physics Letters 88, no. 6 (February 6, 2006): 062908. https://doi.org/10.1063/1.2172216.
    • [2] Olivier Scholder. (2019). scholi/pySPM v0.2.20 (v0.2.20). Zenodo. https://doi.org/10.5281/zenodo.2650457. - • [3] Suhas Somnath, CompPhysChris, ramav87, Numan Laanait, Rajiv Giridharagopal, Maxim Ziatdinov, Mani, str-eat, Gerd Duscher, Carlo, anugrah-saxena, Ondrej Dyck, Jessica Kong, Liambcollins, Enrique A. Lopez-Guerra, Ajinkya Kulkarni, Kavin Teenakul, Magnus Nord, & zhangxinqiao314. (2023). pycroscopy/pycroscopy: 0.63.2 (v0.63.2). Zenodo. https://doi.org/10.5281/zenodo.8229615. + • [3] Suhas Somnath, CompPhysChris, ramav87, Numan Laanait, Rajiv Giridharagopal, Maxim Ziatdinov, Mani, str-eat, Gerd Duscher, Carlo, anugrah-saxena, Ondrej Dyck, Jessica Kong, Liambcollins, Enrique A. Lopez-Guerra, Ajinkya Kulkarni, Kavin Teenakul, Magnus Nord, & zhangxinqiao314. (2023). pycroscopy/pycroscopy: 0.63.2 (v0.63.2). Zenodo. https://doi.org/10.5281/zenodo.8229615.
    • [4] : Huang, Boyuan, Ehsan Nasr Esfahani, and Jiangyu Li. “Mapping Intrinsic Electromechanical Responses at the Nanoscale via Sequential Excitation Scanning Probe Microscopy Empowered by Deep Data.” National Science Review 6, no. 1 (January 1, 2019): 55–63. https://doi.org/10.1093/nsr/nwy096.
    • [5] : Rodriguez, Brian J, Clint Callahan, Sergei V Kalinin, and Roger Proksch. “Dual-Frequency Resonance-Tracking Atomic Force Microscopy.” Nanotechnology 18, no. 47 (November 28, 2007): 475504. https://doi.org/10.1088/0957-4484/18/47/475504.
    • [6] : Gannepalli, A, D G Yablon, A H Tsou, and R Proksch. “Mapping Nanoscale Elasticity and Dissipation Using Dual Frequency Contact Resonance AFM.” Nanotechnology 22, no. 35 (September 2, 2011): 355705. https://doi.org/10.1088/0957-4484/22/35/355705.
    From f58580515b7a8ca9645c511e391237b6b8b89950 Mon Sep 17 00:00:00 2001 From: hugoval <76450221+yudgugger@users.noreply.github.com> Date: Wed, 26 Jun 2024 18:46:26 +0200 Subject: [PATCH 3/5] Update README.md --- doc/README.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/doc/README.md b/doc/README.md index 9854c91a..efa918e3 100644 --- a/doc/README.md +++ b/doc/README.md @@ -504,6 +504,8 @@ A default data processing path management is provided, but the user has the opti

    Following the first processing step (see section IV) - First step of data analysis of the documentation), by default, a new directory is created at the same root as the input data folder, with the nomenclature: 'initial_file_name'_'yyyy-mm-dd-HHh-MMm'_out_'processing_type'. This directory itself contains two subdirectories, figs and nanoloops, and a text file, parameters.txt.