Merge pull request #8 from CDCgov/dev

Dev - updating links

CHANGELOG.md

@@ -3,16 +3,18 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v1.1.0
+## v1.1.0 - 2024-09-19
 
 ### Credits
+- [Amanda Sullivan](https://github.com/mandysulli)
 
 ### Enhancements
 
-- [PR #21](https://github.com/cdcent/mira-nf/pull/21) - add amended_consensus.fasta to email
-- [PR #22](https://github.com/cdcent/mira-nf/pull/22) - add flag that skips the nf-samplesheet creation step. To use this flag you will have to provide a samplesheet that is described as amd platform format in the usage doc
-- [PR #23](https://github.com/cdcent/mira-nf/pull/23) - added in test profile configuration. Added logos.
-- [PR #24](https://github.com/cdcent/mira-nf/pull/24) - Changed nasme of hpc profile to sge profile. Added slurm profile.
+- [PR #21](https://github.com/CDCgov/MIRA-NF/commit/f9ea0bfb933adf5617920a8a046998e4f5ba304d) - add amended_consensus.fasta to email
+- [PR #22](https://github.com/CDCgov/MIRA-NF/commit/07f5320ecd2462f62c7b0846fe08fc3dafd94598) - add flag that skips the nf-samplesheet creation step. To use this flag you will have to provide a samplesheet that is described as amd platform format in the usage doc
+- [PR #23](https://github.com/CDCgov/MIRA-NF/commit/55c9092dfbbfd9ce639633e38fc49bbda28681af) - added in test profile configuration. Added logos.
+- [PR #24](https://github.com/CDCgov/MIRA-NF/commit/c2550c30b44de6cd8b5fe3e0b590a9099bb66a10) - Changed nasme of hpc profile to sge profile. Added slurm profile.
+- [PR #26](https://github.com/CDCgov/MIRA-NF/commit/6baa9681d0c578093d4e32b1f39249104637b206) - Added the RSV Illumina and RSV ONT workflows.
 
 ### Parameters
 
@@ -22,6 +24,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## v1.0.0 - 2024-08-20
 
+### Credits
+- [Ben Rambo-Martin](https://github.com/nbx0)
+- [Amanda Sullivan](https://github.com/mandysulli)
+- [Kristine Lacek](https://github.com/kristinelacek)
+- [Reina Chau](https://github.com/rchau88)
+
 Initial release of mira/nf, created with the [nf-core](https://nf-co.re/) template.
 
 ### `Added`

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: mira-nf
 Type: Package
-Title: Nextflow Pipeline for Influenza and SARS-COV-2 Spike-Gene Genome Assembly and Curation
+Title: Nextflow Pipeline for Influenza, SARS-COV-2 and RSV Assembly and Curation
 Version: 1.1.0
-Date: 2024-09-04
+Date: 2024-09-19
 Authors@R: 
   c(person(given="Ben", family="Rambo-Martin", role=c("aut","cre"), 
            email="nbx0@cdc.gov", comment=c(ORCID="0000-0002-8591-3954")), 
@@ -16,7 +16,7 @@ Authors@R:
 Description: mira-nf
 RoxygenNote: 7.2.3
 License: GPL-3 + file LICENSE
-URL: https://github.com/cdcent/mira-cli
+URL: https://github.com/CDCgov/MIRA-NF
 Encoding: UTF-8
 VignetteBuilder: knitr
-BugReports: https://github.com/cdcent/mira-cli/issues
+BugReports: https://github.com/CDCgov/MIRA-NF/issues