From f2228eeae3432cf4ca44eb914a2186ad2ff25d9f Mon Sep 17 00:00:00 2001 From: "Kelly Sovacool, PhD" Date: Tue, 27 Aug 2024 13:09:38 -0400 Subject: [PATCH] chore: style CHANGELOG.md to prepare for release --- CHANGELOG.md | 20 ++++++++++++++------ 1 file changed, 14 insertions(+), 6 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 93ce3f2..1816442 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,16 +1,24 @@ ## development version -- You can now cite XAVIER with the DOI [10.5281/zenodo.12727315](https://doi.org/10.5281/zenodo.12727315). (#88, @kelly-sovacool) -- Minor documentation improvements. (#92, @kelly-sovacool; #93, @samarth8392) -- The docs website now has a dropdown menu to select which version to view. The latest release is shown by default. (#150, @kelly-sovacool) +### new features + - Add `xavier gui` subcommand to launch the graphical user interface. (#99, @kelly-sovacool) - Previously, `xavier_gui` (with an underscore) was a command in the `ccbrpipeliner` module. - Provide default exome targets for hg38 and mm10, which can be overridden by the optional `--targets` argument. (#102, @kelly-sovacool) - Previously, the `--targets` argument was required with no defaults. -- Increased memory for rules: BWA mem, qualimap, kraken. gatk_contamination is not localrule. (#89, @samarth8392) -- Added new human test dataset for github workflow (#27, @samarth8392) -- fixes minor bug in GUI related to choosing the correct default target file (#108, @samarth8392) +- Add new human test dataset (#27, @samarth8392) + +### bug fixes + +- Fix bug in the GUI that always used the Agilent targets file by default, instead of picking based on the genome. (#108, @samarth8392) - Fix bug in the driver script that caused the snakemake module not to be loaded on biowulf in some cases. (#111, @kelly-sovacool) +- Increased memory for rules: BWA mem, qualimap, kraken. gatk_contamination is no longer a localrule. (#89, @samarth8392) + +### documentation updates + +- You can now cite XAVIER with the DOI [10.5281/zenodo.12727315](https://doi.org/10.5281/zenodo.12727315). (#88, @kelly-sovacool) +- The docs website now has a dropdown menu to select which version to view. The latest release is shown by default. (#150, @kelly-sovacool) +- Other minor documentation improvements. (#92, @kelly-sovacool; #93, @samarth8392) ## XAVIER 3.0.3