diff --git a/CHANGELOG.md b/CHANGELOG.md index 62e64c4..403c0f2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -2,7 +2,9 @@ - New contributing guide available on GitHub and the documentation website. (#114, @kelly-sovacool) - New `xavier debug` subcommand to determine the base directory for debugging purposes. (#114, @kelly-sovacool) +- Upgraded `ccbr_wes_base` docker to v1.1.0 with updated GATK version to v4.6.0.0 (#116, @samarth8392) - Upgrade multiqc container to use v1.15. (#117, @kelly-sovacool) +- Upgrade memory for rule "bwa_mem" to 100G (#118, @samarth8392) ## XAVIER 3.1.0 diff --git a/config/cluster.biowulf.json b/config/cluster.biowulf.json index a647265..7856824 100644 --- a/config/cluster.biowulf.json +++ b/config/cluster.biowulf.json @@ -120,7 +120,7 @@ }, "bwa_mem": { "threads": "24", - "mem": "64G" + "mem": "100G" }, "picard_headers": { "threads": "2", diff --git a/config/cluster.frce.json b/config/cluster.frce.json index 6c7773d..1fe95e1 100644 --- a/config/cluster.frce.json +++ b/config/cluster.frce.json @@ -119,7 +119,7 @@ }, "bwa_mem": { "threads": "24", - "mem": "64G" + "mem": "100G" }, "picard_headers": { "threads": "2", diff --git a/config/containers/images.json b/config/containers/images.json index bc19382..68f2ddd 100644 --- a/config/containers/images.json +++ b/config/containers/images.json @@ -1,6 +1,6 @@ { "images": { - "wes_base": "docker://nciccbr/ccbr_wes_base:v1.1.0", + "wes_base": "docker://nciccbr/ccbr_wes_base:1.1.0", "vcf2maf": "docker://dnousome/ccbr_vcf2maf:v102.0.0", "mutect": "docker://nciccbr/ccbr_mutect:v0.1.0", "fastq_screen": "docker://nciccbr/ccbr_fastq_screen_0.13.0:v2.0",