From 2745910989f85883115c1a21e9f1edfb6937e913 Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Wed, 7 Aug 2024 12:29:03 -0400
Subject: [PATCH] ci: use reusable CCBR/actions workflow

---
 .github/workflows/docs-mkdocs.yml | 25 +++++++++
 .github/workflows/docs.yml        | 85 -------------------------------
 README.md                         |  2 +-
 3 files changed, 26 insertions(+), 86 deletions(-)
 create mode 100644 .github/workflows/docs-mkdocs.yml
 delete mode 100644 .github/workflows/docs.yml

diff --git a/.github/workflows/docs-mkdocs.yml b/.github/workflows/docs-mkdocs.yml
new file mode 100644
index 0000000..4a926ef
--- /dev/null
+++ b/.github/workflows/docs-mkdocs.yml
@@ -0,0 +1,25 @@
+name: docs
+on:
+  workflow_dispatch:
+  release:
+    types:
+      - published
+  push:
+    branches:
+      - main
+    paths:
+      - "docs/**"
+      - "**.md"
+      - .github/workflows/docs-mkdocs.yml
+      - mkdocs.yml
+
+jobs:
+  mkdocs:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - uses: CCBR/actions/mkdocs-mike@main
+        with:
+          github-token: ${{ github.token }}
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
deleted file mode 100644
index 614374e..0000000
--- a/.github/workflows/docs.yml
+++ /dev/null
@@ -1,85 +0,0 @@
-name: docs
-on:
-  workflow_dispatch:
-  release:
-    types:
-      - published
-  push:
-    branches:
-      - main
-    paths:
-      - "docs/**"
-      - "**.md"
-      - .github/workflows/docs.yml
-      - mkdocs.yml
-
-env:
-  actor: "41898282+github-actions[bot]"
-  GH_TOKEN: ${{ github.token }}
-
-jobs:
-  deploy:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
-      - uses: actions/setup-python@v5
-        with:
-          python-version: 3.11
-          cache: pip
-      - run: pip install --upgrade pip -r docs/requirements.txt
-      - name: git config
-        run: |
-          git config --local user.email "${actor}@users.noreply.github.com"
-          git config --local user.name "$actor"
-          gh release list > releases.tsv
-      - name: get version tag & alias
-        shell: python {0}
-        run: |
-          import os
-          import re
-          import warnings
-
-          release_tag = ''
-          with open('releases.tsv', 'r') as infile:
-            for line in infile:
-              release_name, latest, tag, timestamp = line.strip().split('\t')
-              if latest == "Latest":
-                release_tag = tag.strip('v')
-                break
-          if not release_tag:
-            warnings.warn("No latest release found")
-
-          with open('VERSION', 'r') as infile:
-            current_version = infile.read().strip()
-
-          if current_version == release_tag:
-            docs_alias = 'latest'
-            # set version to just major and minor
-            semver_pattern = '(?P<major>0|[1-9]\d*)\.(?P<minor>0|[1-9]\d*)\.(?P<patch>0|[1-9]\d*)(?:-(?P<prerelease>(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+(?P<buildmetadata>[0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?'
-            release_semver = re.match(semver_pattern, release_tag)
-            docs_version = f"{release_semver.group('major')}.{release_semver.group('minor')}"
-          else:
-            semver_pattern = '(?P<major>0|[1-9]\d*)\.(?P<minor>0|[1-9]\d*)\.(?P<patch>0|[1-9]\d*)(?:-(?P<prerelease>(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*)(?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))*))?(?:\+(?P<buildmetadata>[0-9a-zA-Z-]+(?:\.[0-9a-zA-Z-]+)*))?'
-            release_semver = re.match(semver_pattern, release_tag)
-            current_semver = re.match(semver_pattern, current_version)
-
-            groups = ['major', 'minor', 'patch']
-            if current_semver.group('prerelease') and any([current_semver.group(grp) >= release_semver.group(grp) for grp in groups]):
-              docs_alias = ''
-              docs_version = 'dev'
-            else:
-              raise ValueError(f"current version {current_version} is not greater than latest release {release_tag}")
-
-
-          with open(os.getenv("GITHUB_ENV"), 'a') as out_env:
-            out_env.write(f"VERSION={docs_version}\n")
-            out_env.write(f"ALIAS={docs_alias}\n")
-
-      - name: deploy docs
-        run: |
-          mike deploy ${{ env.VERSION }} ${{ env.ALIAS }} \
-            --push \
-            --update-aliases \
-            --branch gh-pages
diff --git a/README.md b/README.md
index ae33a14..ff6d72c 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,7 @@
 # XAVIER - e**X**ome **A**nalysis and **V**ariant explor**ER** 🔬
 
 [![tests](https://github.com/CCBR/XAVIER/workflows/tests/badge.svg)](https://github.com/CCBR/XAVIER/actions/workflows/main.yaml)
-[![docs](https://github.com/CCBR/XAVIER/workflows/docs/badge.svg)](https://github.com/CCBR/XAVIER/actions/workflows/docs.yml)
+[![docs](https://github.com/CCBR/XAVIER/workflows/docs/badge.svg)](https://github.com/CCBR/XAVIER/actions/workflows/docs-mkdocs.yml)
 [![Docker Pulls](https://img.shields.io/docker/pulls/nciccbr/ccbr_wes_base)](https://hub.docker.com/r/nciccbr/ccbr_wes_base)
 [![GitHub Issues](https://img.shields.io/github/issues/CCBR/XAVIER?color=brightgreen)](https://github.com/CCBR/XAVIER/issues)
 [![MIT license](https://img.shields.io/github/license/CCBR/XAVIER)](https://github.com/CCBR/XAVIER/blob/main/LICENSE)