GitHub - CALeDNA/TaxonListToOpenTreePhylogeny: This is a Jupyter Notebook to make phylogenetic trees with the Open Tree of Life from a list of taxa such as those from Anacapa output (CALeDNA format)

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This is a Jupyter Notebook to make phylogenetic trees with the Open Tree of Life from a list of taxa such as those from Anacapa output (CALeDNA format)

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Name		Name	Last commit message	Last commit date
Latest commit History 23 Commits
All_families.ipynb		All_families.ipynb
Bats.ipynb		Bats.ipynb
BigBio.ipynb		BigBio.ipynb
Cal eDNA families.ipynb		Cal eDNA families.ipynb
Cal eDNA get tree.ipynb		Cal eDNA get tree.ipynb
Get_families_or_mrca.ipynb		Get_families_or_mrca.ipynb
Legumes.ipynb		Legumes.ipynb
VertLifeMammalTree.ipynb		VertLifeMammalTree.ipynb
VertLifeMammals.ipynb		VertLifeMammals.ipynb
all_famcites.txt		all_famcites.txt
bigbio_clean.tre		bigbio_clean.tre
bigbio_names.txt		bigbio_names.txt
fam_info_synth.csv		fam_info_synth.csv
fam_info_synth_firstpass.csv		fam_info_synth_firstpass.csv
fam_info_synth_plus.csv		fam_info_synth_plus.csv
famcites.txt		famcites.txt
families_in_tree.tsv		families_in_tree.tsv
families_not_in_tree.tsv		families_not_in_tree.tsv
matches.csv		matches.csv
matches2.csv		matches2.csv
spp_info.csv		spp_info.csv
spp_info_synth.csv		spp_info_synth.csv

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This is a Jupyter Notebook to make phylogenetic trees with the Open Tree of Life from a list of taxa such as those from Anacapa output (CALeDNA format)

jupyter-notebook phylogenetics edna

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