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- tfbpmodeling Public
A collections of functions and utilities to perform modeling tasks on the data from django.tfbindingandperturbation.com
BrentLab/tfbpmodeling’s past year of commit activity - yeastdnnexplorer Public
A development environment to explore implementations of deep neural networks for predicting the relationship between transcription factor and target genes using binding and perturbation data
BrentLab/yeastdnnexplorer’s past year of commit activity - NetSurgeon Public
NetSurgeon is a novel algorithm that utilizes genome-wide gene regulatory networks to identify interventions that force a cell toward a desired expression state
BrentLab/NetSurgeon’s past year of commit activity - Dual_Threshold_Optimization Public
Dual Threshold Optimization compares two ranked lists of features (e.g. genes) to determine the rank threshold for each list that minimizes the hypergeometric p-value of the overlap of features. It then calculates a permutation based empirical p-value and an FDR
BrentLab/Dual_Threshold_Optimization’s past year of commit activity
