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@BorgwardtLab

Machine Learning and Systems Biology Research Department

MLSB Department at the MPI of Biochemistry, Martinsried, Germany

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  1. TOGL TOGL Public

    Topological Graph Neural Networks (ICLR 2022)

    Python 120 22

  2. SAT SAT Public

    Official Pytorch code for Structure-Aware Transformer.

    Python 252 39

Repositories

Showing 10 of 105 repositories
  • autoregressive-noisy-filtration-modeling Public

    Official implementation of the ANFM graph generative model

    BorgwardtLab/autoregressive-noisy-filtration-modeling’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Feb 7, 2025
  • PCR-bias Public
    BorgwardtLab/PCR-bias’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 4, 2024
  • ConformalAMR Public

    Main repository for "Antimicrobial drug recommendation from MALDI-TOF MS with statistical guarantees using conformal prediction"

    BorgwardtLab/ConformalAMR’s past year of commit activity
    Python 1 0 0 0 Updated Nov 5, 2024
  • NodeIndividualizedGNNs Public

    Code and Data for the paper: On the Expressivity and Sample Complexity of Node-Individualized Graph Neural Networks (NeurIPS 2024)

    BorgwardtLab/NodeIndividualizedGNNs’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 29, 2024
  • PST Public

    Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge

    BorgwardtLab/PST’s past year of commit activity
    Python 35 BSD-3-Clause 1 0 1 Updated Oct 17, 2024
  • WWL Public

    Wasserstein Weisfeiler-Lehman Graph Kernels

    BorgwardtLab/WWL’s past year of commit activity
    Python 81 BSD-3-Clause 19 4 0 Updated Sep 1, 2024
  • GraphMatchingSubstitutionMatrices Public

    Code and Data for the paper: Structure- and Function-Aware Substitution Matrices via Learnable Graph Matching (RECOMB 2024 & ICML 2024 Differentiable Almost Everything Workshop)

    BorgwardtLab/GraphMatchingSubstitutionMatrices’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Jul 28, 2024
  • proteinshake Public

    Protein structure datasets for machine learning.

    BorgwardtLab/proteinshake’s past year of commit activity
    Python 105 BSD-3-Clause 10 84 2 Updated Jul 3, 2024
  • WTK Public

    A Wasserstein Subsequence Kernel for Time Series.

    BorgwardtLab/WTK’s past year of commit activity
    Python 21 MIT 7 0 1 Updated Jun 17, 2024
  • CARPE Public
    BorgwardtLab/CARPE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 15, 2024
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