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  1. Bonelab Public

    Collection of utility software from the Bone Imaging Laboratory

    Python 5 2

  2. Bone_Adaptation_as_Level_Set_Motion Public

    Code accommodating the MICCAI-MSKI conference proceeding.

    C++ 1 1

  3. FemurSegmentation Public

    Femur segmentation using bone enhancement filtering and multi label graph cuts

    C++ 9 4

  4. HR-pQCT-Segmentation Public

    Jupyter Notebook 6 1

  5. Ogo Public

    Ogo - A library of tools for opportunistic CT, including internal calibration, segmentation, image manipulation and quantitative analysis.

    Python 4 1

  6. tutorial_dl_segmentation Public

    A tutorial for deep learning-based segmentation with PyTorch, PyTorch-Lightning, and the internal bonelab-pytorch-lightning package.

    Jupyter Notebook

Repositories

Showing 10 of 23 repositories
  • spineFE-benchmark Public

    Code and instructions to reproduce the analyses from our study comparing linear and nonlinear finite element models of vertebral strength across the thoracic and lumbar spine using the VERSE19 dataset. Includes image data, results and visualization scripts to support full reproducibility.

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Apr 17, 2025
  • Ogo Public

    Ogo - A library of tools for opportunistic CT, including internal calibration, segmentation, image manipulation and quantitative analysis.

    Python 4 GPL-3.0 1 1 1 Updated Apr 17, 2025
  • bonelab-website Public

    Source code for the Bone Imaging Laboratory website.

    HTML 0 BSD-3-Clause 0 0 0 Updated Apr 14, 2025
  • Bonelab Public

    Collection of utility software from the Bone Imaging Laboratory

    Python 5 GPL-3.0 2 4 0 Updated Mar 24, 2025
  • Jupyter Notebook 6 GPL-3.0 1 0 0 Updated Jan 28, 2025
  • PHP 1 GPL-3.0 0 1 0 Updated Nov 26, 2024
  • HRpQCT-Knee-Seg Public

    this repo contains an installable package for doing automated HR-pQCT knee segmentation

    Python 0 GPL-3.0 0 1 0 Updated Aug 13, 2024
  • Python 0 0 0 0 Updated Aug 6, 2024
  • hrpqct-knee-segmentation Public

    Scripts for training and testing models with the goal of automating knee contouring. Depends on `bonelab-pytorch-lightning`

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated May 22, 2024
  • bonelab-pytorch-lightning Public

    Tasks, dataset components, loss functions, and utilities for using pytorch lightning for deep learning with medical image data.

    Python 0 GPL-3.0 0 0 0 Updated May 2, 2024

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