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bump protobuf and regenerate pb2.py files
See spesmilo#7922 for a good description of the problem and the rational for restricting to this range of `protobuf` versions. tldr; keepkey support restricts us to `protobuf<4` because we need to support both the new and the old format. This fixes #214 This removes a lot of DeprecationWarning messages due to outdated pb2 files.
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