partial_sampling_spatially_structured_population

Repository for my lab immersion on spatially structured populations with partial updates.

Slurm folder

Intended to be run on SCITAS clusters, each script writes a .json file with parameters and output data in ./results.

py well-mixed_simulations.py [job_array_nb] [N] [M] [log_s_min] [log_s_max] [nb_trajectories]
py well-mixed_matrix_computation.py [job_array_nb] [N] [M] [log_s_min] [log_s_max]
py clique_simulations.py [job_array_nb] [N] [M] [log_s_min] [log_s_max] [nb_trajectories] [migration_rate] [nb_colonies]
py cycle_simulations.py [job_array_nb] [N] [M] [log_s_min] [log_s_max] [nb_trajectories] [migration_rate] [nb_colonies] [alpha]
py star_simulations.py [job_array_nb] [N] [M] [log_s_min] [log_s_max] [nb_trajectories] [migration_rate] [nb_colonies] [alpha]

Name		Name	Last commit message	Last commit date
Latest commit History 32 Commits
clique_results		clique_results
cycle_results		cycle_results
figures_old		figures_old
results		results
slurm		slurm
star_results		star_results
well-mixed_results		well-mixed_results
.gitignore		.gitignore
README.md		README.md
clique-graphe_phi-vs-s.py		clique-graphe_phi-vs-s.py
compute_phi_well-mixed.py		compute_phi_well-mixed.py
cycle_phi-vs-s.py		cycle_phi-vs-s.py
requirements.txt		requirements.txt
star-graph_phi-vs-s.py		star-graph_phi-vs-s.py
structured_population.ipynb		structured_population.ipynb
test.ipynb		test.ipynb
utils.py		utils.py
visualization.py		visualization.py
well-mixed.ipynb		well-mixed.ipynb
well-mixed_phi-vs-s.py		well-mixed_phi-vs-s.py