chore(Docker): Update Docker image to use python base, and minor vers…

…ion updates.
Biofarmer · Sep 13, 2021 · 4f93d1f · 4f93d1f
1 parent 6dbc45d
commit 4f93d1f
Showing 1 changed file with 14 additions and 23 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -2,37 +2,28 @@
 # docker build --build-arg VER=1.2.3 --no-cache -t ecogenomic/gtdbtk:latest -t ecogenomic/gtdbtk:1.2.3 .
 # docker push ecogenomic/gtdbtk:latest && sudo docker push ecogenomic/gtdbtk:1.2.3
 
-FROM ubuntu:18.04
+FROM python:3.8-slim-bullseye
 
 ARG VER
 
 # ---------------------------------------------------------------------------- #
 # --------------------- INSTALL HMMER, PYTHON3, FASTTREE---------------------- #
 # ---------------------------------------------------------------------------- #
 RUN apt-get update -y -m && \
-    DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends -y \
-                                               wget \
-                                               libgomp1 \
-                                               hmmer=3.1b2+dfsg-5ubuntu1 \
-                                               mash=2.0-2 \
-                                               prodigal=1:2.6.3-1 \
-                                               fasttree=2.1.10-1 \
-                                               unzip \
-                                               python3.8 \
-                                               python3-pip \
-                                               python3-setuptools \
-                                               python3-wheel && \
+    DEBIAN_FRONTEND=noninteractive apt-get install --no-install-recommends --no-install-suggests -y \
+        wget \
+        libgomp1 \
+        libgsl25 \
+        libgslcblas0 \
+        hmmer=3.* \
+        mash=2.2.* \
+        prodigal=1:2.6.* \
+        fasttree=2.1.* \
+        unzip && \
     apt-get clean && \
     rm -rf /var/lib/apt/lists/* && \
-    ln -s /usr/bin/fasttree /usr/bin/FastTree && \
     ln -s /usr/bin/fasttreeMP /usr/bin/FastTreeMP
 
-# ---------------------------------------------------------------------------- #
-# ------------------------------ ALIAS PYTHON3  ------------------------------ #
-# ---------------------------------------------------------------------------- #
-RUN update-alternatives --install /usr/bin/python python /usr/bin/python3.8 1 && \
-    update-alternatives --set python /usr/bin/python3.8
-
 # ---------------------------------------------------------------------------- #
 # ----------------------------- INSTALL PPLACER ------------------------------ #
 # ---------------------------------------------------------------------------- #
@@ -45,9 +36,9 @@ RUN wget https://github.com/matsen/pplacer/releases/download/v1.1.alpha19/pplace
 # ---------------------------------------------------------------------------- #
 # ----------------------------- INSTALL FASTANI ------------------------------ #
 # ---------------------------------------------------------------------------- #
-RUN wget https://github.com/ParBLiSS/FastANI/releases/download/v1.32/fastANI-Linux64-v1.32.zip -q && \
-    unzip fastANI-Linux64-v1.32.zip -d /usr/bin && \
-    rm fastANI-Linux64-v1.32.zip
+RUN wget https://github.com/ParBLiSS/FastANI/releases/download/v1.33/fastANI-Linux64-v1.33.zip -q && \
+    unzip fastANI-Linux64-v1.33.zip -d /usr/bin && \
+    rm fastANI-Linux64-v1.33.zip
 
 # ---------------------------------------------------------------------------- #
 # --------------------- SET GTDB-TK MOUNTED DIRECTORIES ---------------------- #