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almahmoud authored Nov 8, 2023
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This project aims to extend [r2u](https://github.com/eddelbuettel/r2u),
in hopes of providing a repository of Ubuntu binaries via `apt` for all Bioconductor packages.

**Bioc2u is current only available for Ubuntu Jammy and is still in alpha development.**
**Bioc2u is currently only available for Ubuntu Jammy and is still in alpha development.**

### Getting started

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curl https://raw.githubusercontent.com/Bioconductor/bioc2u/devel/apt_setup.sh | sudo bash
```
After the initial setup, you may use `apt` or `install.packages()` freely. Installing packages through `apt` can be done in any shell session, by using the
`r-bioc-` prefix and the all-lowercase name of the package, eg `apt install -y r-bioc-biocmanager`. You may alternatively continue to use R traditionally.
`r-bioc-` prefix and the all-lowercase name of the package, eg `apt install -y r-bioc-genomicranges`. You may alternatively continue to use R traditionally.

By default, the `r-core-base` installation (provided by the r2u project), uses the [`bspm`](https://cran.r-project.org/web/packages/bspm/index.html) package to enable the usage of the package manager
when installing packages from within R via `install.packages()` or `BiocManager::install()`. You may thus continue to use R as you would outside of this
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