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inBioconductor/DelayedArray (press backspace or delete to remove)My alabaster.matrix package has a DelayedMask class that replaces all instances of a placeholder with an NA value during
extract_*_array() calls. Essentially, it is equivalent to:
library(DelayedArray) ...
LTLA
- Opened 28 days ago
- #122
Another side-effect from #119 - unname() doesn t restore the matrixClass of my ReloadedArray:
library(alabaster.base)
arr - array(rpois(260, 10), c(26, 10))
dir - tempfile()
saveObject(arr, dir)
obj ...
LTLA
- 3
- Opened on Dec 13, 2024
- #121
Curently path( DelayedArray ) just calls path( DelayedOp ), which effectively tries to call path(seed(object)). Could a
dedicated path,DelayedArray-method be added that calls path(object@seed)?
As per ...
LTLA
- 3
- Opened on Nov 30, 2024
- #120
For custom seeds, I would like to be able to make showtree() more informative. For example, I might have a seed class
where one or more of the slots is another DelayedArray, and I would like to show the ...
LTLA
- 6
- Opened on Nov 20, 2024
- #119
I tried to install package geneLenDataBase to run ChAMP. I kept getting message Error in loadNamespace(i, c(lib.loc,
.libPaths()), versionCheck = vI[[i]]) : namespace DelayedArray 0.24.0 is being loaded, ...
fhao2
- 6
- Opened on Aug 4, 2024
- #118
I actually don t know why I come across this problem when I test fastMNN. I hope I could find out why this error happen,
and code is as follows.
zilionis - ZilionisLungData() zilionis - zilionis[, colSums(assay(zilionis)) ...
tomyputw
- 3
- Opened on Jul 8, 2024
- #117
When x is an HDF5Matrix, but I haven t attached any BioC packages, I get:
cbind(x, x)
Error: unable to find an inherited method for function ‘bindCOLS’ for signature ‘x = HDF5Matrix ’
Seemingly, this ...
multimeric
- 3
- Opened on May 31, 2024
- #116
PeteHaitch/DelayedMatrixStats@9048f3e7a24035f3526a2ac0455598138e0c8480 causes
https://github.com/Bioconductor/DelayedArray/blob/700cfdc38e0f97a67942963c1555d0fd83a7bc41/R/DelayedArray-utils.R#L868
to ...
LTLA
- 6
- Opened on Apr 17, 2024
- #115
a = arrow::Array$create(c( foo ))
as.vector(a) # works fine
[1] foo
suppressMessages(library(DelayedArray))
as.vector(a)
Error in extract_array(x, index) :
the first argument to extract_array() ...
Wainberg
- 1
- Opened on Mar 2, 2024
- #114
When multiplying a DelayedMatrix with a ordinary matrix, the dimnames changes when the output has no columns:
library(DelayedArray)
X - DelayedArray(matrix(runif(100), 20, 5))
y - cbind(runif(5), runif(5)) ...
LTLA
- 2
- Opened on Mar 1, 2024
- #113
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