Update to Dockstore API #5
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| name: Update to Dockstore API | |
| on: workflow_dispatch | |
| jobs: | |
| apiUpdate: | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:devel | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install Dependencies | |
| run: Rscript -e "install.packages('yaml')" | |
| - name: Install Node.js | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 20 | |
| - name: Install lucybot converter | |
| run: npm install -g api-spec-converter | |
| - name: Add safe directory | |
| run: git config --global --add safe.directory /__w/AnVIL/AnVIL | |
| - name: Download API and write MD5 | |
| run: Rscript -e "source('./inst/scripts/update_dockstore_api.R')" | |
| - name: Commit changes | |
| if: ${{ success() }} | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| add: '["inst/service/dockstore/api.yaml", "R/Dockstore.R"]' | |
| message: 'Update API' | |
| - name: Push action | |
| uses: ad-m/github-push-action@master | |
| with: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |