.github/workflows/TagBot.yml

@@ -0,0 +1,15 @@
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/documentation.yml

@@ -0,0 +1,29 @@
+name: Documentation
+
+on:
+  push:
+    branches:
+      - master
+    tags: '*'
+  pull_request:
+
+jobs:
+  build:
+    permissions:
+      actions: write
+      contents: write
+      pull-requests: read
+      statuses: write
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: '1'
+      - uses: julia-actions/cache@v2
+      - name: Install dependencies
+        run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+      - name: Build and deploy
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: julia --project=docs/ docs/make.jl

.gitignore

@@ -0,0 +1,6 @@
+docs/build
+test/example.gff
+test/example.embl
+test/example.gtf
+test/test.jl
+Manifest.toml

.travis.yml

@@ -0,0 +1,19 @@
+language: julia
+julia:
+  - 1.6
+  - 1.10
+
+script:
+  - julia -e 'using Pkg; Pkg.build(); Pkg.test("GenomicAnnotations")'
+
+jobs:
+  allowed_failures:
+    - julia: nightly
+  include:
+    - stage: "Documentation"
+      julia: 1.10
+      os: linux
+      script:
+        - julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+        - julia --project=docs/ docs/make.jl
+      after_success: skip

Project.toml

@@ -1,8 +1,25 @@
 name = "GenomicAnnotations"
-uuid = "00d57c2a-bcd2-11e8-2d4f-9d9debe22f04"
+uuid = "4f8a0a0a-376d-5ac0-ab14-e88793df67f0"
 authors = ["Karl Dyrhage <karl.dyrhage@icm.uu.se>"]
-version = "0.1.0"
+version = "0.4.5"
 
 [deps]
+BioGenerics = "47718e42-2ac5-11e9-14af-e5595289c2ea"
 BioSequences = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
+CodecZlib = "944b1d66-785c-5afd-91f1-9de20f533193"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
+TranscodingStreams = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
+
+[compat]
+BioGenerics = "0.1"
+BioSequences = "3"
+DataFrames = "0.20, 0.21, 0.22, 1"
+TranscodingStreams = "0.9, 0.10, 0.11"
+julia = "1"
+CodecZlib = "0.7"
+
+[extras]
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Test"]