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base repository: BioJulia/GenomicAnnotations.jl
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base: v0.1.0
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head repository: BioJulia/GenomicAnnotations.jl
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compare: master
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Commits on Oct 5, 2018

  1. Travis

    kdyrhage committed Oct 5, 2018
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  2. Updated test dependencies

    kdyrhage committed Oct 5, 2018
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  3. Updated test dependencies

    kdyrhage committed Oct 5, 2018
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Commits on Oct 9, 2018

  1. Updated README

    kdyrhage committed Oct 9, 2018
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  2. Updated README

    kdyrhage committed Oct 9, 2018
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Commits on Dec 14, 2018

  1. Add precompilation

    kdyrhage committed Dec 14, 2018
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  2. Allow '^' in positions

    kdyrhage committed Dec 14, 2018
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  4. Added GZip.jl as dependency

    kdyrhage committed Dec 14, 2018
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  5. Added GZip.jl as dependency

    kdyrhage committed Dec 14, 2018
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  6. Added GZip.jl as dependency

    kdyrhage committed Dec 14, 2018
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Commits on Feb 21, 2019

  1. Added special cases to @genes

    kdyrhage committed Feb 21, 2019
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  3. Updated UUID

    kdyrhage committed Feb 21, 2019
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  4. Updated version number

    kdyrhage committed Feb 21, 2019
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Commits on Jul 16, 2019

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  2. Added

    kdyrhage committed Jul 16, 2019
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  3. Updated version number

    kdyrhage committed Jul 16, 2019
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Commits on Jul 17, 2019

  1. Remove julia-0.7 support

    kdyrhage committed Jul 17, 2019
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  2. Added compat

    kdyrhage committed Jul 17, 2019
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Commits on Jul 31, 2019

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Commits on Aug 6, 2019

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  2. Updated version

    kdyrhage committed Aug 6, 2019
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Commits on Sep 25, 2019

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  2. Updated readgbk docstring

    kdyrhage committed Sep 25, 2019
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  3. Improved documentations

    kdyrhage committed Sep 25, 2019
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  4. Updated docs to use FASTX

    kdyrhage committed Sep 25, 2019
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  7. Travis magic

    kdyrhage committed Sep 25, 2019
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  8. Updated for BioJuliaRegistry

    kdyrhage committed Sep 25, 2019
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  9. Fixed Documenter

    kdyrhage committed Sep 25, 2019
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  10. Added docs badge

    kdyrhage committed Sep 25, 2019
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Commits on Dec 10, 2019

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  2. Added iscomplete()

    kdyrhage committed Dec 10, 2019
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  3. Updated macro to allow an Array{Chromosome}, to ignore Ref(), and to …

    …take new keywords (CDS, rRNA, etc.)
    kdyrhage committed Dec 10, 2019
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  4. Updated README

    kdyrhage committed Dec 10, 2019
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  5. Removed iscds

    kdyrhage committed Dec 10, 2019
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  6. Updated docs

    kdyrhage committed Dec 10, 2019
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  7. Updated Documenter version

    kdyrhage committed Dec 10, 2019
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  8. Updated docs

    kdyrhage committed Dec 10, 2019
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  10. Added checks for v1.3

    kdyrhage committed Dec 10, 2019
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  11. Fixed typo

    kdyrhage committed Dec 10, 2019
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  12. Updated sequence() docstring

    kdyrhage committed Dec 10, 2019
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Commits on Dec 12, 2019

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  2. Delete Manifest.toml

    kdyrhage authored Dec 12, 2019
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  3. Delete REQUIRE

    kdyrhage authored Dec 12, 2019
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  4. Updated version number

    kdyrhage committed Dec 12, 2019
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  5. 2
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15 changes: 15 additions & 0 deletions .github/workflows/TagBot.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,15 @@
name: TagBot
on:
issue_comment:
types:
- created
workflow_dispatch:
jobs:
TagBot:
if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
runs-on: ubuntu-latest
steps:
- uses: JuliaRegistries/TagBot@v1
with:
token: ${{ secrets.GITHUB_TOKEN }}
ssh: ${{ secrets.DOCUMENTER_KEY }}
29 changes: 29 additions & 0 deletions .github/workflows/documentation.yml
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@@ -0,0 +1,29 @@
name: Documentation

on:
push:
branches:
- master
tags: '*'
pull_request:

jobs:
build:
permissions:
actions: write
contents: write
pull-requests: read
statuses: write
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: julia-actions/setup-julia@v2
with:
version: '1'
- uses: julia-actions/cache@v2
- name: Install dependencies
run: julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
- name: Build and deploy
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: julia --project=docs/ docs/make.jl
6 changes: 6 additions & 0 deletions .gitignore
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@@ -0,0 +1,6 @@
docs/build
test/example.gff
test/example.embl
test/example.gtf
test/test.jl
Manifest.toml
19 changes: 19 additions & 0 deletions .travis.yml
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@@ -0,0 +1,19 @@
language: julia
julia:
- 1.6
- 1.10

script:
- julia -e 'using Pkg; Pkg.build(); Pkg.test("GenomicAnnotations")'

jobs:
allowed_failures:
- julia: nightly
include:
- stage: "Documentation"
julia: 1.10
os: linux
script:
- julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
- julia --project=docs/ docs/make.jl
after_success: skip
268 changes: 0 additions & 268 deletions Manifest.toml

This file was deleted.

21 changes: 19 additions & 2 deletions Project.toml
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@@ -1,8 +1,25 @@
name = "GenomicAnnotations"
uuid = "00d57c2a-bcd2-11e8-2d4f-9d9debe22f04"
uuid = "4f8a0a0a-376d-5ac0-ab14-e88793df67f0"
authors = ["Karl Dyrhage <karl.dyrhage@icm.uu.se>"]
version = "0.1.0"
version = "0.4.5"

[deps]
BioGenerics = "47718e42-2ac5-11e9-14af-e5595289c2ea"
BioSequences = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
CodecZlib = "944b1d66-785c-5afd-91f1-9de20f533193"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
TranscodingStreams = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"

[compat]
BioGenerics = "0.1"
BioSequences = "3"
DataFrames = "0.20, 0.21, 0.22, 1"
TranscodingStreams = "0.9, 0.10, 0.11"
julia = "1"
CodecZlib = "0.7"

[extras]
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[targets]
test = ["Test"]
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