From e78b7da911dedfcfe4ccca97ccd1857b9189c5aa Mon Sep 17 00:00:00 2001 From: Alexander Sullivan Date: Mon, 24 Sep 2018 14:28:23 -0400 Subject: [PATCH] Changed webservice.cgi name to rnaSeqMapCoverage MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit New feature: • Changed webservice.cgi filename to rnaSeqMapCoverage.cgi Bug fix: • Fixed bug where sometimes bootstrap would not load • Fixed bug where the dumpOutput was not showing the data in a readable-manner for ReadsMappedNucleotidePosition In progress: • MEDIAN control data • Visual cue for directional arrows on RNA-Table • Getting the eFP-Seq Browser to work for internet explorer TODO: • Make eFP Overview more responsive to screen's resolution • TMM or TPM and median for additional normalization methods • Expand the creation of the private database to include adding from public and private database to your creation Known bugs: • After generating new data, scrolling up doesn’t work unless the user scrolls down first • Does not work on IE • Google Drive repos do not work for IGB links --- README.md | 3 --- cgi-bin/Submission_page.html | 6 +++--- cgi-bin/core/custom.js | 11 +++++++++-- cgi-bin/core/custom.min.js | 2 +- cgi-bin/get_gene_structures.html | 2 +- cgi-bin/{webservice.cgi => rnaSeqMapCoverage.cgi} | 0 cgi-bin/{webservice.html => rnaSeqMapCoverage.html} | 2 +- index.html | 8 ++++---- 8 files changed, 19 insertions(+), 15 deletions(-) rename cgi-bin/{webservice.cgi => rnaSeqMapCoverage.cgi} (100%) rename cgi-bin/{webservice.html => rnaSeqMapCoverage.html} (94%) diff --git a/README.md b/README.md index 1994a71..c484b9e 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,5 @@ # eFP-Seq-Browser -[![TravisCI - Build Status](https://travis-ci.org/ASully/eFP-Seq-Browser.svg?branch=master)](https://travis-ci.org/ASully/eFP-Seq-Browser) -[![Maintainability](https://api.codeclimate.com/v1/badges/c87696819acab6a6c803/maintainability)](https://codeclimate.com/github/ASully/eFP-Seq-Browser/maintainability) - The eFP-Seq Browser is a RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a "electronic fluorescent pictopgrahic" (eFP) image. This web-tool also allows generation of new datasets if provided with SAM/BAM (with their index files) to allow visualization of any RNA-Seq mapping coverage. Gene expression levels and similarity is also shown by calculating the Reads per Kilobase per Million reads mapped (RPKM) expression levels and Pearson Correlation Coefficient (PCC) scores amongst its different splice variants. ## Getting Started diff --git a/cgi-bin/Submission_page.html b/cgi-bin/Submission_page.html index a722ebb..dbedb04 100644 --- a/cgi-bin/Submission_page.html +++ b/cgi-bin/Submission_page.html @@ -15,9 +15,9 @@ - - - + + + - - + + - - + +