GATK_SNP.yaml

name: GATK_SNP
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - bwa=0.7.17=h5bf99c6_8
  - bzip2=1.0.8=h5eee18b_6
  - c-ares=1.28.1=hd590300_0
  - ca-certificates=2024.6.2=hbcca054_0
  - dbus=1.13.18=hb2f20db_0
  - expat=2.6.2=h6a678d5_0
  - freetype=2.12.1=h4a9f257_0
  - gatk4=4.3.0.0=py36hdfd78af_0
  - gdbm=1.18=hd4cb3f1_4
  - glib=2.78.4=h6a678d5_0
  - glib-tools=2.78.4=h6a678d5_0
  - htslib=1.20=h81da01d_0
  - krb5=1.20.1=h143b758_1
  - ld_impl_linux-64=2.38=h1181459_1
  - libcurl=8.7.1=h251f7ec_0
  - libdeflate=1.20=hd590300_0
  - libedit=3.1.20230828=h5eee18b_0
  - libev=4.33=hd590300_2
  - libffi=3.4.4=h6a678d5_1
  - libgcc-ng=13.2.0=h77fa898_10
  - libglib=2.78.4=hdc74915_0
  - libgomp=13.2.0=h77fa898_10
  - libiconv=1.16=h5eee18b_3
  - libnghttp2=1.57.0=h2d74bed_0
  - libpng=1.6.39=h5eee18b_0
  - libssh2=1.11.0=h0841786_0
  - libstdcxx-ng=11.2.0=h1234567_1
  - libuuid=1.41.5=h5eee18b_0
  - libxcb=1.15=h7f8727e_0
  - libzlib=1.2.13=h4ab18f5_6
  - ncurses=6.5=h59595ed_0
  - openjdk=11.0.13=h87a67e3_0
  - openssl=3.3.1=h4ab18f5_0
  - pcre2=10.42=hebb0a14_1
  - perl=5.34.0=h5eee18b_2
  - pip=24.0=py312h06a4308_0
  - python=3.12.3=h996f2a0_1
  - readline=8.2=h5eee18b_0
  - samtools=1.20=h50ea8bc_0
  - setuptools=69.5.1=py312h06a4308_0
  - sqlite=3.45.3=h5eee18b_0
  - tk=8.6.14=h39e8969_0
  - trimmomatic=0.39=hdfd78af_2
  - tzdata=2024a=h04d1e81_0
  - vcftools=0.1.16=h9a82719_5
  - wheel=0.43.0=py312h06a4308_0
  - xz=5.4.6=h5eee18b_1
  - zlib=1.2.13=h4ab18f5_6
prefix: /gss1/home/ksuhecheng/.conda/envs/GATK_SNP