Tags: Benchmarking-Initiative/Benchmark-Models-PEtab
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Use setuptools_scm for package versions (#243) Removes some extra `build-system.requires` entries. So far, repository versions were date-based (well, there was only one, v20230717). The Python package had a constant version number `0.0.0a1`. To work well with the default setuptools_scm schema, future releases should ideally use `vYYYY.MM.DD` tags. The Python package will then also have the same version as the benchmark collection as such.
Smith_BMCSystBiol2013 (#180) * add draft implementation * fix time & model id * fix concentration vs amount * fix Ins concentration * fix conc/amount * fix scaling factors nominal value * add insulin injection event, add simulation test * Update MODEL1212210000_Ins_events.xml * Update MODEL1212210000_Ins_events.xml * fixup event * don't use infinite parameter values * fix test problem * fix compartment observables * add indicator functions for different model compositions * Update experimentalCondition_Smith_BMCSystBiol2013.tsv * conditionalize k4, kminus4, k_irs1_basal_syn, fix test conditions * workaround E2F1 * revert to original model to avoid amount/conc snafu * ??? * remove null obs * update version * fix conditions * fix conditions * correct tx rate for 2H * remove debug stuff, add reference * add E2F1 condition * parametrize fig2h fixes * fix readme * use URLs instead of copying files * add readme * added simulated data file * fixes + visualization table * reenable linting
Smith_BMCSystBiol2013 (#180) * add draft implementation * fix time & model id * fix concentration vs amount * fix Ins concentration * fix conc/amount * fix scaling factors nominal value * add insulin injection event, add simulation test * Update MODEL1212210000_Ins_events.xml * Update MODEL1212210000_Ins_events.xml * fixup event * don't use infinite parameter values * fix test problem * fix compartment observables * add indicator functions for different model compositions * Update experimentalCondition_Smith_BMCSystBiol2013.tsv * conditionalize k4, kminus4, k_irs1_basal_syn, fix test conditions * workaround E2F1 * revert to original model to avoid amount/conc snafu * ??? * remove null obs * update version * fix conditions * fix conditions * correct tx rate for 2H * remove debug stuff, add reference * add E2F1 condition * parametrize fig2h fixes * fix readme * use URLs instead of copying files * add readme * added simulated data file * fixes + visualization table * reenable linting