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Tags: Benchmarking-Initiative/Benchmark-Models-PEtab

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v2024.10.29

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update simulated data (#251)

v2024.10.15

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Use setuptools_scm for package versions (#243)

Removes some extra `build-system.requires` entries.

So far, repository versions were date-based (well, there was only one, v20230717). The Python package had a constant version number `0.0.0a1`.
To work well with the default setuptools_scm schema, future releases should ideally use `vYYYY.MM.DD` tags.
The Python package will then also have the same version as the benchmark collection as such.

v20230717

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Smith_BMCSystBiol2013 (#180)

* add draft implementation

* fix time & model id

* fix concentration vs amount

* fix Ins concentration

* fix conc/amount

* fix scaling factors nominal value

* add insulin injection event, add simulation test

* Update MODEL1212210000_Ins_events.xml

* Update MODEL1212210000_Ins_events.xml

* fixup event

* don't use infinite parameter values

* fix test problem

* fix compartment observables

* add indicator functions for different model compositions

* Update experimentalCondition_Smith_BMCSystBiol2013.tsv

* conditionalize k4, kminus4, k_irs1_basal_syn, fix test conditions

* workaround E2F1

* revert to original model to avoid amount/conc snafu

* ???

* remove null obs

* update version

* fix conditions

* fix conditions

* correct tx rate for 2H

* remove debug stuff, add reference

* add E2F1 condition

* parametrize fig2h fixes

* fix readme

* use URLs instead of copying files

* add readme

* added simulated data file

* fixes + visualization table

* reenable linting

v2023.07.17

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This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
Smith_BMCSystBiol2013 (#180)

* add draft implementation

* fix time & model id

* fix concentration vs amount

* fix Ins concentration

* fix conc/amount

* fix scaling factors nominal value

* add insulin injection event, add simulation test

* Update MODEL1212210000_Ins_events.xml

* Update MODEL1212210000_Ins_events.xml

* fixup event

* don't use infinite parameter values

* fix test problem

* fix compartment observables

* add indicator functions for different model compositions

* Update experimentalCondition_Smith_BMCSystBiol2013.tsv

* conditionalize k4, kminus4, k_irs1_basal_syn, fix test conditions

* workaround E2F1

* revert to original model to avoid amount/conc snafu

* ???

* remove null obs

* update version

* fix conditions

* fix conditions

* correct tx rate for 2H

* remove debug stuff, add reference

* add E2F1 condition

* parametrize fig2h fixes

* fix readme

* use URLs instead of copying files

* add readme

* added simulated data file

* fixes + visualization table

* reenable linting