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Automated nested CV & result plotting (beta)

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@shraddhapai shraddhapai released this 13 Sep 17:54
· 2017 commits to master since this release

Major upgrade to netDx functionality but in beta stage. Wait for the next release to get a stable version.

  • New functions to plot predictor results, including performance views (ROC/PR curves), Cyrest-based generation of EnrichmentMaps of selected features, and integrated PSN view.
    • Includes plotAllResults() which will do all this in a single function call.
  • New R function to run nested cross-validation in single function call. Takes generic function for custom feature design as input.
  • Three R notebooks illustrating predictor plotting and automated nested cross-validation. See .Rmd files in examples/ directory.