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NEWS
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netDx 1.5.3
==================
* Moved RCy3, scater, clusterExperiment and netSmooth to "Suggests" to reduce dependency burden
* Sped up vignettes by limiting all to binary classification and limiting number of layers
* Removed TL;DR from vignettes as usefulness in question but maintainance high.
Developers notes:
-------------------
* Added Dockerfile and Github Actions for automated testing
* GHA auto-generates a Docker image with netDx which gets pushed to shraddhapai/netdx_devenv
netDx 1.5.2
==================
* Added wrapper functions for ease-of-use. Includes:
* getResults() to plot results of running the predictor
* getPSN() for creating and visualizing integrated PSN
* confusionMatrix() to visualize confusion matrix
* tSNEPlotter() to visualize tSNE of integrated PSN (doesn't require Cytoscape)
* Added CITATION file with citations to netDx methods and software paper
netDx 1.5.1
==================
* Adding support for Java 16.
* Disabling CNV-based vignette to allow other three vignettes to run without causing build timeout on devel system
netDx 1.1.4
==================
Changes:
* New functionality to smooth mutations over interaction, starting from sparse
somatic mutations
* BiocFileCache usage update
Changes in version 0.99.0 (2019-11-11)
+ Submitted to Bioconductor