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In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

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CircleCI Build Status License: GPL v3 CircleCi Community Nextflow version Scif

Bacterial WGS training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

The material includes slides with theory concepts and a bunch of practical exercises using nextflow and singularity, focusing on the interpretation of results.

Agenda

Day 1

Day 2

Day 3

Day 4